PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G165200.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 533aa    MW: 60326.8 Da    PI: 9.0494
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G165200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-15401201298
                         HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++ +v+p++f++++ gk   s t++le+++g+ ++v++  + + ++++l+ GW +Fv+a++++e+ f++F+++++s f   v +f+
  Sevir.9G165200.2.p  40 FKHSMVMPNRFLKHFAGK--LSGTIKLESPNGNLYDVEV--TERFNKVILRHGWGDFVDAHRIEENNFLLFRHIENSLF--EVLIFD 120
                         3456********888877..677****************..99999****************************99888..888887 PP
2B3421.7e-132633461699
                         EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         l +pk++a +h + +++   +tl+   ++++W  ++  rk +++++l++ W +Fv++n+++  D+++F   +  ++f+++v ++r+
  Sevir.9G165200.2.p 263 LAIPKEYAFSHCLHERT--NVTLQRpGKSKKWHPRFHERKDKRMFMLSGQWLDFVRDNHVQKEDICLFLPAKGgRRFTFTVYLLRA 346
                         78*********777555..6888884667*******88999999*************************77655999999999886 PP
3B352.49.5e-17437529699
                         ..-HHHHTT-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                  B3   6 tpsdvlksgrl.vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                         ++ dv+++ rl  l k+fa++  +++++  + +l +   + W+ k+ + ++++r +l +GW+ F+++ngL++gD+++F+l+++ +e +++v
  Sevir.9G165200.2.p 437 INVDVTRRYRLiELGKQFATSQ-LPHRG--QTVLLQCMKKIWTTKMVIHGGRRRWFLVGGWSTFARDNGLRVGDICLFELKKTeEELTMKV 524
                         5778888865537999**9665.55444..356677799*******9999999999*************************999******* PP

                         EEE-S CS
                  B3  95 kvfrk 99 
                         +++++
  Sevir.9G165200.2.p 525 HIISR 529
                         *9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-2027124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-2227128IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.36529122IPR003340B3 DNA binding domain
CDDcd100171.81E-1931120No hitNo description
SMARTSM010191.0E-932122IPR003340B3 DNA binding domain
PfamPF023627.6E-1440121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-17239346IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-16240346IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.012247347IPR003340B3 DNA binding domain
CDDcd100175.42E-14247342No hitNo description
PROSITE profilePS5086310.673248347IPR003340B3 DNA binding domain
PfamPF023624.1E-12263346IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-20423529IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.03E-19423528IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-17428528No hitNo description
SMARTSM010192.8E-8433530IPR003340B3 DNA binding domain
PROSITE profilePS5086312.196433530IPR003340B3 DNA binding domain
PfamPF023622.3E-14437529IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MARNGGSRKK PCDCCKRYLD HLAGKNQNMS CFLRHMTANF KHSMVMPNRF LKHFAGKLSG  60
TIKLESPNGN LYDVEVTERF NKVILRHGWG DFVDAHRIEE NNFLLFRHIE NSLFEVLIFD  120
ADGCEKVFSC AGIKNNRSLQ ENTVDSLYIS SSSCHDTSES SASERLVRCE KGGSSHCGKT  180
AKMDATSSSS ESSGEYNLSE NKSFETDDLQ TNPGPDYVLS RGSYLSEAQE ERVIALIQEI  240
QPESTVYVAV MRKCHIEQPG PYLAIPKEYA FSHCLHERTN VTLQRPGKSK KWHPRFHERK  300
DKRMFMLSGQ WLDFVRDNHV QKEDICLFLP AKGGRRFTFT VYLLRATATY SRGGAAFQKV  360
GSCNGRSSTK MASVVHIKEE STDAYNVSES NSGGPSEAPY IVSSKSCLSQ SQKKIVEEMV  420
GAIQSEVPIF VAIMKKINVD VTRRYRLIEL GKQFATSQLP HRGQTVLLQC MKKIWTTKMV  480
IHGGRRRWFL VGGWSTFARD NGLRVGDICL FELKKTEEEL TMKVHIISRE QF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G165200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982421.10.0B3 domain-containing protein Os03g0619600
RefseqXP_004982422.10.0B3 domain-containing protein Os03g0619600
RefseqXP_012698169.10.0B3 domain-containing protein Os03g0619600
SwissprotQ6AV220.0Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A368SHD80.0A0A368SHD8_SETIT; Uncharacterized protein
STRINGSi035266m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.14e-15B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]