PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G165200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 533aa MW: 60326.8 Da PI: 9.0494 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.5 | 1.6e-15 | 40 | 120 | 12 | 98 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ +v+p++f++++ gk s t++le+++g+ ++v++ + + ++++l+ GW +Fv+a++++e+ f++F+++++s f v +f+ Sevir.9G165200.2.p 40 FKHSMVMPNRFLKHFAGK--LSGTIKLESPNGNLYDVEV--TERFNKVILRHGWGDFVDAHRIEENNFLLFRHIENSLF--EVLIFD 120 3456********888877..677****************..99999****************************99888..888887 PP | |||||||
2 | B3 | 42 | 1.7e-13 | 263 | 346 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 l +pk++a +h + +++ +tl+ ++++W ++ rk +++++l++ W +Fv++n+++ D+++F + ++f+++v ++r+ Sevir.9G165200.2.p 263 LAIPKEYAFSHCLHERT--NVTLQRpGKSKKWHPRFHERKDKRMFMLSGQWLDFVRDNHVQKEDICLFLPAKGgRRFTFTVYLLRA 346 78*********777555..6888884667*******88999999*************************77655999999999886 PP | |||||||
3 | B3 | 52.4 | 9.5e-17 | 437 | 529 | 6 | 99 |
..-HHHHTT-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 6 tpsdvlksgrl.vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 ++ dv+++ rl l k+fa++ +++++ + +l + + W+ k+ + ++++r +l +GW+ F+++ngL++gD+++F+l+++ +e +++v Sevir.9G165200.2.p 437 INVDVTRRYRLiELGKQFATSQ-LPHRG--QTVLLQCMKKIWTTKMVIHGGRRRWFLVGGWSTFARDNGLRVGDICLFELKKTeEELTMKV 524 5778888865537999**9665.55444..356677799*******9999999999*************************999******* PP EEE-S CS B3 95 kvfrk 99 +++++ Sevir.9G165200.2.p 525 HIISR 529 *9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.3E-20 | 27 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-22 | 27 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.365 | 29 | 122 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.81E-19 | 31 | 120 | No hit | No description |
SMART | SM01019 | 1.0E-9 | 32 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-14 | 40 | 121 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.4E-17 | 239 | 346 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-16 | 240 | 346 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.012 | 247 | 347 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.42E-14 | 247 | 342 | No hit | No description |
PROSITE profile | PS50863 | 10.673 | 248 | 347 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-12 | 263 | 346 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-20 | 423 | 529 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.03E-19 | 423 | 528 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.37E-17 | 428 | 528 | No hit | No description |
SMART | SM01019 | 2.8E-8 | 433 | 530 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.196 | 433 | 530 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-14 | 437 | 529 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MARNGGSRKK PCDCCKRYLD HLAGKNQNMS CFLRHMTANF KHSMVMPNRF LKHFAGKLSG 60 TIKLESPNGN LYDVEVTERF NKVILRHGWG DFVDAHRIEE NNFLLFRHIE NSLFEVLIFD 120 ADGCEKVFSC AGIKNNRSLQ ENTVDSLYIS SSSCHDTSES SASERLVRCE KGGSSHCGKT 180 AKMDATSSSS ESSGEYNLSE NKSFETDDLQ TNPGPDYVLS RGSYLSEAQE ERVIALIQEI 240 QPESTVYVAV MRKCHIEQPG PYLAIPKEYA FSHCLHERTN VTLQRPGKSK KWHPRFHERK 300 DKRMFMLSGQ WLDFVRDNHV QKEDICLFLP AKGGRRFTFT VYLLRATATY SRGGAAFQKV 360 GSCNGRSSTK MASVVHIKEE STDAYNVSES NSGGPSEAPY IVSSKSCLSQ SQKKIVEEMV 420 GAIQSEVPIF VAIMKKINVD VTRRYRLIEL GKQFATSQLP HRGQTVLLQC MKKIWTTKMV 480 IHGGRRRWFL VGGWSTFARD NGLRVGDICL FELKKTEEEL TMKVHIISRE QF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G165200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982421.1 | 0.0 | B3 domain-containing protein Os03g0619600 | ||||
Refseq | XP_004982422.1 | 0.0 | B3 domain-containing protein Os03g0619600 | ||||
Refseq | XP_012698169.1 | 0.0 | B3 domain-containing protein Os03g0619600 | ||||
Swissprot | Q6AV22 | 0.0 | Y3196_ORYSJ; B3 domain-containing protein Os03g0619600 | ||||
TrEMBL | A0A368SHD8 | 0.0 | A0A368SHD8_SETIT; Uncharacterized protein | ||||
STRING | Si035266m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 4e-15 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G165200.2.p |
Publications ? help Back to Top | |||
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