PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G164800.5.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 334aa    MW: 37720.1 Da    PI: 8.382
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G164800.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32e-111752411784
                         E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          ++k++a  h   +++s  +tl++ +++++W +k+  r+ s++ +l + W eFv++n+++egD++++  
  Sevir.9G164800.5.p 175 GISKEYAFPHF--PHKSANVTLQTpSKSNKWHLKFYKRNASRKNMLMGQWLEFVRDNHVQEGDICLLFP 241
                         57777776664..457789*****4555*******77999999**********************9764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.2E-7556IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.5E-6557IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE patternPS013590853IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.106.6E-18150258IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-18151258IPR015300DNA-binding pseudobarrel domain
CDDcd100176.53E-18158256No hitNo description
SMARTSM010190.0015158258IPR003340B3 DNA binding domain
PROSITE profilePS5086311.589159258IPR003340B3 DNA binding domain
PfamPF023621.2E-9174253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MFLQDTVCEV CGNIGYKHLL VCCRDCKCSA VHLYCLDKVI FDASLAEWWC DECLQRRGEV  60
PCSRSLERVS SQRSPNHDHF GSTVQQQVTK RVKSAKNAGP RRKSKEDIPS AKYSLDSDDL  120
QASSKAHYVL SYRSYLSEAQ KQRVMAFIKE IQPKITVFVA VMLKRNVQPP GPFLGISKEY  180
AFPHFPHKSA NVTLQTPSKS NKWHLKFYKR NASRKNMLMG QWLEFVRDNH VQEGDICLLF  240
PTAGGRRYTF TVYLFCASAT HSIGRAGFQM VCPCPGRSST KMASEVHIME ESTNDEHISL  300
ETDMREISDD SLEGEDSGGL SQPPYIVPCR NSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G164800.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797619.10.0B3 domain-containing protein Os03g0619800-like isoform X2
TrEMBLA0A2T7C3R30.0A0A2T7C3R3_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3R70.0A0A2T7C3R7_9POAL; Uncharacterized protein
STRINGPavir.Ia01277.1.p1e-172(Panicum virgatum)