PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G164800.14.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 117aa MW: 13202.8 Da PI: 11.4774 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.2 | 9.4e-16 | 47 | 110 | 36 | 99 |
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 + + g++W ++ + +++++ +l +GW +F+++ngL++gD+++F+l+++ ++ +++v+++++ Sevir.9G164800.14.p 47 AVALQCMGKTWITQMVIHNGRRW-FLNGGWVRFARDNGLRVGDICLFELKKNkRKLTMKVHIISR 110 44455689*******77777666.6999**********************999999****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-22 | 6 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-20 | 7 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 7.3E-9 | 14 | 111 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.87E-17 | 14 | 109 | No hit | No description |
PROSITE profile | PS50863 | 11.914 | 15 | 111 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-14 | 35 | 110 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MAFIKEIQPK ITVFVAVMLK RNVQPPGPFL ELGVRYAAAH LPASGQAVAL QCMGKTWITQ 60 MVIHNGRRWF LNGGWVRFAR DNGLRVGDIC LFELKKNKRK LTMKVHIISR EQSSLK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 100 | LKKNKRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G164800.14.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022685567.1 | 7e-81 | B3 domain-containing protein Os03g0619600-like | ||||
Swissprot | Q6AV22 | 3e-27 | Y3196_ORYSJ; B3 domain-containing protein Os03g0619600 | ||||
TrEMBL | K4AG14 | 1e-60 | K4AG14_SETIT; Uncharacterized protein | ||||
STRING | Si037821m | 2e-61 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 7e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G164800.14.p |
Publications ? help Back to Top | |||
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