PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G164800.13.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 262aa    MW: 29664.4 Da    PI: 9.9402
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G164800.13.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.3e-151922553699
                          EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                   B3  36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                           +  +  g++W  ++ + +++++ +l +GW +F+++ngL++gD+++F+l+++ ++ +++v+++++
  Sevir.9G164800.13.p 192 AVALQCMGKTWITQMVIHNGRRW-FLNGGWVRFARDNGLRVGDICLFELKKNkRKLTMKVHIISR 255
                          44455589*******77777666.6999**********************9999999***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.3E-6557IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579034.94E-7556IPR011011Zinc finger, FYVE/PHD-type
PROSITE patternPS013590853IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.101.3E-21151255IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-19152254IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.3E-9159256IPR003340B3 DNA binding domain
CDDcd100175.75E-17159254No hitNo description
PROSITE profilePS5086311.914160256IPR003340B3 DNA binding domain
PfamPF023624.0E-13180255IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MFLQDTVCEV CGNIGYKHLL VCCRDCKCSA VHLYCLDKVI FDASLAEWWC DECLQRRGEV  60
PCSRSLERVS SQRSPNHDHF GSTVQQQVTK RVKSAKNAGP RRKSKAEDIP SAKYSLDSDD  120
LQASSKAHYV LSYRSYLSEA QKQRVMAFIK EIQPKITVFV AVMLKRNVQP PGPFLELGVR  180
YAAAHLPASG QAVALQCMGK TWITQMVIHN GRRWFLNGGW VRFARDNGLR VGDICLFELK  240
KNKRKLTMKV HIISREQSSL K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238245LKKNKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G164800.13.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685567.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLA0A2T7C3P81e-108A0A2T7C3P8_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3Q41e-109A0A2T7C3Q4_9POAL; Uncharacterized protein
STRINGPavir.Ia01277.1.p1e-87(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-07B3 family protein