PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G164700.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 520aa    MW: 58876 Da    PI: 8.1434
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G164700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.7e-134605164399
                         S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         g++We k+ + +++++ ++ +GW +F++ ngL++gD+++F+l+++ +  ++ v+++rk
  Sevir.9G164700.2.p 460 GKTWEAKMMFHNGRRW-FINGGWPNFARGNGLRVGDICLFELKKEeKLLTMAVHIIRK 516
                         7*******99888877.5899**********************988999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.04E-6253IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.4E-6354IPR013083Zinc finger, RING/FYVE/PHD-type
Gene3DG3DSA:2.40.330.105.2E-14254356IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-14255357IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.023262357IPR003340B3 DNA binding domain
CDDcd100178.99E-14262357No hitNo description
PROSITE profilePS5086310.701263362IPR003340B3 DNA binding domain
PfamPF023629.2E-8278347IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-13435516IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0054440517IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-13445516IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-11459515No hitNo description
PfamPF023623.7E-11460516IPR003340B3 DNA binding domain
PROSITE profilePS5086312.083460517IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDILCEVCGD IGFRHLLLCC GDCKHSAIHQ YCLEKVVFDA SLIEWFCYEC LQRRGEVTCI  60
RSLEKVPSER PSSNAHFGSI VHQPITKRVE SARDAVPWRN RKRKSFVSKY ASHNKIYSPR  120
KKHAKNKSNM PYSPNDGCEE VFSCSGIKNI PSVQDRSADS IDTSSISQHD ITEPSESSER  180
FTEYQKGSSY PRGKNLKMAA ASSSSEESGE DIPSENVSLA SDDLQSPLGA DYVLSYRTYL  240
SKAQKVRVMT LIQEIQPEFT VYIATMRKTS VQSPGPYLGI TKEYALAHCP DRSTTVTLEM  300
PGKNKKWHPK FYKRDESRKN FLMGQWLDFV RDNHVQEGDI VLLLPTKGGN RSIFTVYLLH  360
ETATHSSMAS EVHIEEPTTG EHASQESGTL EIPHESLESE DSDSLFLPPY FVPCKNLLSK  420
SQKRIVEERV RAIRSEVPLC VAVMKNNNVG VAQRWMLCGG KTWEAKMMFH NGRRWFINGG  480
WPNFARGNGL RVGDICLFEL KKEEKLLTMA VHIIRKELF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G164700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982416.10.0B3 domain-containing protein Os03g0619800
SwissprotQ6AV211e-102Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A368SJ590.0A0A368SJ59_SETIT; Uncharacterized protein
STRINGSi035278m0.0(Setaria italica)