PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G164700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 520aa MW: 58876 Da PI: 8.1434 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42 | 1.7e-13 | 460 | 516 | 43 | 99 |
S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 g++We k+ + +++++ ++ +GW +F++ ngL++gD+++F+l+++ + ++ v+++rk Sevir.9G164700.2.p 460 GKTWEAKMMFHNGRRW-FINGGWPNFARGNGLRVGDICLFELKKEeKLLTMAVHIIRK 516 7*******99888877.5899**********************988999999999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.04E-6 | 2 | 53 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 2.4E-6 | 3 | 54 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Gene3D | G3DSA:2.40.330.10 | 5.2E-14 | 254 | 356 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-14 | 255 | 357 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.023 | 262 | 357 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.99E-14 | 262 | 357 | No hit | No description |
PROSITE profile | PS50863 | 10.701 | 263 | 362 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.2E-8 | 278 | 347 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-13 | 435 | 516 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0054 | 440 | 517 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-13 | 445 | 516 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.97E-11 | 459 | 515 | No hit | No description |
Pfam | PF02362 | 3.7E-11 | 460 | 516 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.083 | 460 | 517 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence Send to blast |
MDILCEVCGD IGFRHLLLCC GDCKHSAIHQ YCLEKVVFDA SLIEWFCYEC LQRRGEVTCI 60 RSLEKVPSER PSSNAHFGSI VHQPITKRVE SARDAVPWRN RKRKSFVSKY ASHNKIYSPR 120 KKHAKNKSNM PYSPNDGCEE VFSCSGIKNI PSVQDRSADS IDTSSISQHD ITEPSESSER 180 FTEYQKGSSY PRGKNLKMAA ASSSSEESGE DIPSENVSLA SDDLQSPLGA DYVLSYRTYL 240 SKAQKVRVMT LIQEIQPEFT VYIATMRKTS VQSPGPYLGI TKEYALAHCP DRSTTVTLEM 300 PGKNKKWHPK FYKRDESRKN FLMGQWLDFV RDNHVQEGDI VLLLPTKGGN RSIFTVYLLH 360 ETATHSSMAS EVHIEEPTTG EHASQESGTL EIPHESLESE DSDSLFLPPY FVPCKNLLSK 420 SQKRIVEERV RAIRSEVPLC VAVMKNNNVG VAQRWMLCGG KTWEAKMMFH NGRRWFINGG 480 WPNFARGNGL RVGDICLFEL KKEEKLLTMA VHIIRKELF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G164700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982416.1 | 0.0 | B3 domain-containing protein Os03g0619800 | ||||
Swissprot | Q6AV21 | 1e-102 | Y3982_ORYSJ; B3 domain-containing protein Os03g0619800 | ||||
TrEMBL | A0A368SJ59 | 0.0 | A0A368SJ59_SETIT; Uncharacterized protein | ||||
STRING | Si035278m | 0.0 | (Setaria italica) |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G164700.2.p |