PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G164300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 331aa MW: 38136.9 Da PI: 9.6427 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.9 | 3.3e-22 | 27 | 115 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffkv+ d +++ rl +p kf++++ g kt++le+++g +++v++ +k+ g++vl++GWk Fv a++Lk gDf+vF++dg+s+ Sevir.9G164300.2.p 27 FFKVM--TDDFSE-RLGIPDKFVQHFRGR--IAKTVKLESRTGCTFNVEV--TKSLGKVVLQTGWKAFVCAHDLKMGDFLVFRYDGTSRL- 109 88999..777766.5********777766..6679***************..********************************996666. PP .EEEEE- CS B3 92 lvvkvfr 98 +v +f+ Sevir.9G164300.2.p 110 -KVWIFD 115 .888886 PP | |||||||
2 | B3 | 50.7 | 3.3e-16 | 243 | 328 | 13 | 98 |
TT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + + +++++a+ + e++t l + +g+sWev +++ + +sg+ l+kGWk+F+++n+L+ gD ++F+l ++++ +++v+++r Sevir.9G164300.2.p 243 PQTMDISREYADVYlpF----EDQT-LLLQHRGKSWEVGCRInihKSNSGTKRLSKGWKQFARDNNLQLGDLCLFELLENKKYTMNVHIIR 328 46688889999777542....2334.55666*********887778888889**************************99********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-25 | 20 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.82E-25 | 22 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.056 | 24 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.34E-24 | 25 | 115 | No hit | No description |
Pfam | PF02362 | 7.1E-20 | 27 | 115 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.8E-13 | 27 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-21 | 224 | 328 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-20 | 225 | 328 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.0E-8 | 230 | 330 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.437 | 231 | 330 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.72E-16 | 233 | 328 | No hit | No description |
Pfam | PF02362 | 4.7E-14 | 244 | 328 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MRKPGKKCKE RDAYHHWYHS DEQERYFFKV MTDDFSERLG IPDKFVQHFR GRIAKTVKLE 60 SRTGCTFNVE VTKSLGKVVL QTGWKAFVCA HDLKMGDFLV FRYDGTSRLK VWIFDLSCCE 120 KMPPCHFMRS PIRGGGKGEE QIEISRSCDD LPMESTEIKS KAWKQREGSM NLNTSSTSSS 180 DSSGDSLSPE DQKSHSVPSY ILPQRTYLTC VQKKKLKERV RAICSKTPIY GCVMKKSSID 240 AKPQTMDISR EYADVYLPFE DQTLLLQHRG KSWEVGCRIN IHKSNSGTKR LSKGWKQFAR 300 DNNLQLGDLC LFELLENKKY TMNVHIIRIK * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G164300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982411.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X2 | ||||
Swissprot | Q851V5 | 1e-102 | Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A368SHK2 | 0.0 | A0A368SHK2_SETIT; Uncharacterized protein | ||||
STRING | Si039093m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 8e-23 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G164300.2.p |