PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G164000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 385aa MW: 42994.1 Da PI: 6.6513 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.2 | 3.4e-19 | 51 | 131 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++p +fa++++g s ++l+++sg++W++ + ++ ++++l++GWk+Fv+a+ + egD ++Fk++g s+f v vf++ Sevir.9G164000.1.p 51 ETMSIPARFANNFNGH--ISEVVSLKSPSGKTWSIGV-GNNDTDEVFLQSGWKDFVSAHSIAEGDYLLFKYSGVSSF--DVLVFDS 131 569*******888666..6779***************.5666666***************************99999..8888876 PP | |||||||
2 | B3 | 41.9 | 1.8e-13 | 276 | 375 | 1 | 99 |
EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 f++v+ ps+v ++ g ++++ +fa+++ g ++ +++l+ + +W +++ ++ s++ + ++GW +Fv +ngL + D+++F+l++ Sevir.9G164000.1.p 276 FVQVMHPSHVRAQkpGVVSISSEFASKYLGAGRG--DIILRRvSIKGKWHARFTCNRFSRG-LTGRGWCGFVGDNGLLDHDVCLFELMKGq 363 778888999988877999**********444233..78888856669******88888877.6789********************99766 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +++v+v+rk Sevir.9G164000.1.p 364 RRPTMTVHVLRK 375 999999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-23 | 35 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-23 | 37 | 137 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.072 | 38 | 132 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.68E-19 | 39 | 130 | No hit | No description |
SMART | SM01019 | 1.8E-12 | 41 | 132 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-16 | 51 | 130 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-17 | 269 | 374 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-17 | 270 | 374 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.15E-10 | 274 | 374 | No hit | No description |
Pfam | PF02362 | 8.2E-11 | 276 | 375 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0026 | 276 | 376 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.065 | 278 | 376 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MLSQGQGEPE GMQNLDKNCR VCMEWQEHCY WSHMADDQKH FFKPMVGGFA ETMSIPARFA 60 NNFNGHISEV VSLKSPSGKT WSIGVGNNDT DEVFLQSGWK DFVSAHSIAE GDYLLFKYSG 120 VSSFDVLVFD SSGCEKTSPH FAKNHGYERI EGSAGVEGAR RGSHKFKGGK DCTPQLLPSD 180 EDEDGDDDSD LELAVQKNTS KSISKSCKRK LYRDIEQVHS QVKSDEDDLE LDHEGDAPTG 240 YYFCKNGPVS DYHLTEEDRE EISSIRIPAQ STNPVFVQVM HPSHVRAQKP GVVSISSEFA 300 SKYLGAGRGD IILRRVSIKG KWHARFTCNR FSRGLTGRGW CGFVGDNGLL DHDVCLFELM 360 KGQRRPTMTV HVLRKVRGHF VLLR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G164000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982409.2 | 0.0 | B3 domain-containing protein Os03g0622200 | ||||
Swissprot | Q10GM3 | 1e-135 | Y3222_ORYSJ; B3 domain-containing protein Os03g0622200 | ||||
TrEMBL | A0A368SJ49 | 0.0 | A0A368SJ49_SETIT; Uncharacterized protein | ||||
STRING | Si040023m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-21 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G164000.1.p |
Publications ? help Back to Top | |||
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