PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G161700.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 349aa MW: 37474.2 Da PI: 10.4402 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.4 | 4.5e-31 | 282 | 339 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d +++++tYegeHnh+ Sevir.9G161700.3.p 282 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDSSMLIVTYEGEHNHT 339 9*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.4E-18 | 233 | 278 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 9.7E-34 | 268 | 339 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.998 | 275 | 341 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.06E-27 | 278 | 339 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-37 | 280 | 340 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.2E-27 | 282 | 338 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MEEVEEANRA AVESCHRVLA LLSQPHDPAQ ARSIALGTDE ACAKFRKVVS LLSNGGGAGA 60 GGEAGPSGTS RSHPRAKVVS RRQNPGFLTQ KGFLDSNTPV VVLNSAHPSP SSAQVYPRTG 120 ALDAQSIHPL GGPPKLVQPL SAHFQFSNVS SRYQFPHQQQ QKLQAEMFKR SNSGINLKFD 180 STSGTGTMSS ARSFLSSLSM DGSVASLDGK SSSFHLIGGP AMSDPVNAQQ APRRRCTGRG 240 EDGTGKCAVT GRCHCSKRRK LRVKRSIKVP AISNKIADIP PDEYSWRKYG QKPIKGSPHP 300 RGYYKCSSVR GCPARKHVER CVDDSSMLIV TYEGEHNHTR MPTQSTQA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-21 | 268 | 342 | 2 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G161700.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698494.1 | 0.0 | protein WRKY1 isoform X2 | ||||
Swissprot | Q93WU6 | 3e-96 | WRK74_ARATH; Probable WRKY transcription factor 74 | ||||
TrEMBL | A0A368SH78 | 0.0 | A0A368SH78_SETIT; Uncharacterized protein | ||||
STRING | Si036408m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28650.1 | 6e-81 | WRKY DNA-binding protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G161700.3.p |
Publications ? help Back to Top | |||
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