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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G159400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | CPP | ||||||||
Protein Properties | Length: 762aa MW: 81567.9 Da PI: 6.5742 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 43.8 | 5.2e-14 | 462 | 501 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++++C+CkkskClk+YC Cfaa+++Cs C+C++C N+++ Sevir.9G159400.1.p 462 SCRRCSCKKSKCLKLYCACFAAKVYCSGFCSCQGCLNNHT 501 6899*********************************987 PP | |||||||
2 | TCR | 50.6 | 3.8e-16 | 547 | 586 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnC+ks+ClkkYCeCf++g+ Cs +C+Ce+CkN+ Sevir.9G159400.1.p 547 RHKRGCNCRKSSCLKKYCECFQSGVGCSMSCRCESCKNSF 586 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 6.6E-13 | 461 | 502 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 34.538 | 462 | 587 | IPR005172 | CRC domain |
Pfam | PF03638 | 5.6E-10 | 464 | 499 | IPR005172 | CRC domain |
SMART | SM01114 | 1.5E-14 | 547 | 588 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 9.6E-12 | 549 | 585 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 762 aa Download sequence Send to blast |
MDPPESPPAG QPSFTDVSLY EDSPVFDFIN SLSPIATPKP LDSAQNGQLF KSSDLVPVSS 60 IFTSPQVNPQ KESKPGIRDG YIQLSQGLSP NCQRNQIGSS SCIELSGSPT IPSENCSPSE 120 DATILPSKWP QPIPLGSETL GDAKKQDTDG KADHSSDVGQ VKLSSTCYDQ NGVDQMESST 180 SGRKVQENEL AKQYNDDLAA CSLNHLISHS GTGNGVMSKS GLSLEAQQLS WNLRSDDVIF 240 SKSFMPMDQG NSEDSQKKKF DGSTGCYIQS AADNTHVYCA GATEGVATNH DPEMLPGVIQ 300 SQLVSNEYFF DTFKVPSDDM ALSEDQCGRL HRCSLFNEKV GASDMSVQSG SNPHLANICG 360 DNYLKPAGSP VYALPGIGLH LNAVASNSSN NMPFTINPPL QPEHNSPTTI VSCSETGLYS 420 SEVYTRIHDD HSSQKTMPNA NESCQESHKK KRRKLQNGDG DSCRRCSCKK SKCLKLYCAC 480 FAAKVYCSGF CSCQGCLNNH THEETVSCIR KRTESRNPLA FAPTVTRACD SGSDFGDNSN 540 NTPASARHKR GCNCRKSSCL KKYCECFQSG VGCSMSCRCE SCKNSFGKRE GVLLLATAKM 600 EKGAKAKGTR STEEKLAFDK QDVVGQSGDL PSTENLFATP SLGPCRSSIL PPSTCSEPPL 660 STAGYSSRLH NSQSPIKADV LLSYFDTCAA EMIVGDDSAN IQEVGSSCIS SVKVVSPNKK 720 RVSPLHTGTG LSPIGRSGRK LVLKSIPSFP SLTGDADSEP H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-12 | 466 | 584 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 2e-12 | 466 | 584 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 448 | 452 | KKKRR |
2 | 448 | 453 | KKKRRK |
3 | 449 | 453 | KKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G159400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797027.1 | 0.0 | protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
TrEMBL | A0A368SHB6 | 0.0 | A0A368SHB6_SETIT; Uncharacterized protein | ||||
STRING | Si034711m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14774 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 2e-64 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G159400.1.p |