PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G156700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 303aa    MW: 32961 Da    PI: 7.719
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G156700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.9e-10555146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        ++rWT eE+  l  +++++G g W+tI +          R+  ++k++w++
  Sevir.9G156700.1.p  5 KQRWTSEEEAALRAGIARHGVGKWRTILKDPEfsstlCYRSNVDLKDKWRN 55
                        79****************************999999978**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.487161IPR017930Myb domain
SuperFamilySSF466896.03E-15259IPR009057Homeodomain-like
SMARTSM007171.2E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-13556IPR009057Homeodomain-like
PfamPF002498.1E-7556IPR001005SANT/Myb domain
CDDcd116604.77E-20657No hitNo description
Gene3DG3DSA:1.10.10.101.3E-18120194IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.46E-18120201IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.2E-13121186IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.934123191IPR005818Linker histone H1/H5, domain H15
PfamPF005381.0E-10124184IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGAPKQRWTS EEEAALRAGI ARHGVGKWRT ILKDPEFSST LCYRSNVDLK DKWRNMNVIV  60
STSSSRDKGK TAVRKTRTTP KNNDHTVVIS TAVTSDIDDE IVDEKPIAAV PSEAQNTSNP  120
KKSHSRLDNI IMEAIKSLNE PTGSHRTTIA NYIEEQYWPP SDFDHLLSAK LKDLATSGKL  180
IKVNRKYRIA PSSPNSEGRS PKMLLLEDVQ REPVKIGSND SKTLTRSQVD AELARMATMT  240
GEEASAAAAR AVAEAEAIMA EAEAAAREAE AAEAEAQAAQ AFAEAAFLTL KNRNTANLMA  300
QA*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G156700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2806320.0AY280632.1 Zea mays single myb histone 6 (Smh6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982335.10.0single myb histone 6 isoform X1
SwissprotC0HIA31e-159SMH6_MAIZE; Single myb histone 6
TrEMBLA0A368SH210.0A0A368SH21_SETIT; Uncharacterized protein
STRINGSi036471m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-71telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]