PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.9G153200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 195aa MW: 21752.9 Da PI: 9.0374 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 234.9 | 1.8e-72 | 5 | 168 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlks.nvekees 91 +++ + e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+ q l++++h + ++e+lkv++ ++++ n+ ++ Sevir.9G153200.1.p 5 QIVPALEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIQSLPVQNH-----SQLVQENLKVHNFSFSTeNYCEYAP 90 567788******************************************************9.....5568899999998886515666666 PP YABBY 92 astsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s++ ++ ++ s++ d++ ++ +v PekrqrvPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl Sevir.9G153200.1.p 91 SSSKYRMPTMfSTKGDQD--HMLHVRAAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 168 677777766644444433..44567889**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.6E-70 | 11 | 168 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.84E-7 | 115 | 162 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.3E-4 | 117 | 162 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence Send to blast |
MSAPQIVPAL EHVCYVHCNF CNTILAVSVP SNSMLNIVTV RCGHCTSLLS VNLRGLIQSL 60 PVQNHSQLVQ ENLKVHNFSF STENYCEYAP SSSKYRMPTM FSTKGDQDHM LHVRAAPEKR 120 QRVPSAYNRF IKEEIRRIKA SNPAISHREA FSTAAKNWAH FPNIHFGLGP LESSKKLDEA 180 IGAAGHPHKV QDLY* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.9G153200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982272.1 | 1e-138 | protein YABBY 2 | ||||
Swissprot | Q10FZ7 | 1e-101 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A368SGU3 | 1e-139 | A0A368SGU3_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ia01130.1.p | 1e-121 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.2 | 5e-58 | YABBY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.9G153200.1.p |