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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G142000.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 329aa MW: 35265.7 Da PI: 5.2473 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47 | 4.6e-15 | 133 | 179 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++iN++f eL +++P + kK++Ka+iL A++Y+k+Lq Sevir.9G142000.3.p 133 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYVKELQ 179 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.082 | 129 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-19 | 133 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-17 | 133 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-12 | 133 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.25E-16 | 134 | 183 | No hit | No description |
SMART | SM00353 | 4.2E-16 | 135 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MEDTGLFMEW ATNTLQHEHP GAAADHDFSE ATFPSLQALR EASHAAEMVQ DLVAGVHAPN 60 SWSSGDGVGD TAANHLPASW SFGATSAQPG SGSNGMMEAP AARGQPDLVH GPPPTRRAGL 120 RGLGSMSASY AQDHIIAERK RREKINQRFI ELSTVIPGLK KMDKATILSD ATRYVKELQE 180 KVKDLEASGS SGRSIETRLV LVKRPCLHAA AAADDDGSPF SPSPGTPTAR KELPEIEVRF 240 SEKSVMVRVH CENSEGVAVK VLTEMEELQL AIIHANVMLF SACTLIIAIT AKVEEGFTIT 300 KEEIVDRLDS ALLNQHSSCN STEQAETC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 142 | ERKRRE |
2 | 138 | 143 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G142000.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986324.1 | 0.0 | transcription factor bHLH25 | ||||
TrEMBL | A0A368SGI4 | 0.0 | A0A368SGI4_SETIT; Uncharacterized protein | ||||
STRING | Si038721m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G142000.3.p |