PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G140200.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GRF

Protein Properties

Length: 330aa MW: 36786.2 Da PI: 9.7669

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G140200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.8	4.6e-24	52	96	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH++r+r+rsrk++e+ Sevir.9G140200.2.p 52 DPEPGRCRRTDGKKWRCSKEAMADHKYCERHINRNRHRSRKPVEN 96 79****************************************997 PP
2	QLQ	35	4.5e-13	1	29	9	37
QLQ 9 qlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++L++Q+l+yKyL a++P+P+ Ll i+k Sevir.9G140200.2.p 1 MELEHQALIYKYLHAKAPIPSSLLISISK 29 79**********************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08880	1.3E-7	1	27	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	15.926	1	29	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.803	52	96	IPR014977	WRC domain
Pfam	PF08879	2.6E-20	53	95	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MELEHQALIY KYLHAKAPIP SSLLISISKS FRSSNRVSWR PLYQGYTNAD SDPEPGRCRR 60 TDGKKWRCSK EAMADHKYCE RHINRNRHRS RKPVENQPKK TAKDTPAAAA AGSLPCAVSQ 120 GSLKKAKVND SKPGTVSYWT DSLNRTMLSK EKANQQTEDN NTPLIKSTNR QPTLSLLSQL 180 KQHNKPDKFS PAVDNASISS DTILKAWESI NKHSQKSISS TQLHDAESLQ SVLQNFSLAK 240 NENMESEKNK YSDSMLVSST FYHSAEGPRT TCLTPNMTQV QADCISSSWE MPQGGPLGEI 300 LTNSKNSNDS NKKCDSRSYG WLLNLDHAP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G140200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982189.1	0.0	growth-regulating factor 9
Swissprot	Q9FRG8	1e-165	GRF9_ORYSJ; Growth-regulating factor 9
TrEMBL	K4AA87	0.0	K4AA87_SETIT; Uncharacterized protein
STRING	Si035794m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	3e-32	growth-regulating factor 1

Link Out ? help Back to Top
Phytozome	Sevir.9G140200.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]