PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G138200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 361aa    MW: 38724.3 Da    PI: 5.2319
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G138200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.52.3e-082933252254
                         SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         ++yp+  e+ +LA  +gL+ +q+++WF N R +
  Sevir.9G138200.1.p 293 HPYPDDGEKLKLAVTTGLSRSQISNWFINARVR 325
                         89*****************************88 PP
2BELL53.75.1e-18149211971
                BELL   9 kakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                         +akLl ll e++ r ++y  +l  v+ssFe + g g+a  Ytsl  +a++rhF +L+ ai  +
  Sevir.9G138200.1.p 149 QAKLLGLLSELESREERYFGELGRVASSFEPALGDGAASAYTSLMAQAMARHFGNLRRAILRR 211
                         58**********************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-1184210IPR006563POX domain
PfamPF075263.7E-2389208IPR006563POX domain
PROSITE profilePS5007111.127266329IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.3E-25268341IPR009057Homeodomain-like
SMARTSM003893.9E-8269333IPR001356Homeobox domain
CDDcd000866.19E-10269330No hitNo description
SuperFamilySSF466892.31E-16275336IPR009057Homeodomain-like
PfamPF059205.3E-17286325IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MVMAKQHEKG SPKRAPNEPA PQSAVAERPS PPAPFRLELC GHCDDRRRQD DGSNGAGPLL  60
LTLGPFGSAT DGSCSCAVAP APAPATMAVL RGSRYLRPAQ ELLGEVVRMA DLAAGAGDEE  120
AAAEKQERLD AGGRRAARLA DKNDGDGIQA KLLGLLSELE SREERYFGEL GRVASSFEPA  180
LGDGAASAYT SLMAQAMARH FGNLRRAILR RLRLHAAAAA KRTLRAGEEG ERGDGGDDDD  240
DDEEVTEEMV EMVARRTKLA AAARAEQAWR PLRGLPEGSV AVLRAWLFDH FLHPYPDDGE  300
KLKLAVTTGL SRSQISNWFI NARVRLWKPM VEEMYKDEFS EGSAVSRDDD TSASGASSSS  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A9e-16275333563Homeobox protein Meis2
4xrm_B9e-16275333563Homeobox protein Meis2
5bng_A8e-16275333159Homeobox protein Meis2
5bng_B8e-16275333159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G138200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982179.10.0BEL1-like homeodomain protein 11 isoform X2
TrEMBLK4ABS20.0K4ABS2_SETIT; Uncharacterized protein
STRINGSi036329m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.17e-36BEL1-like homeodomain 11