PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G138100.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 651aa    MW: 71769.5 Da    PI: 5.897
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G138100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-084024391954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +e+  L++++gLt +q+++WF N R +
  Sevir.9G138100.3.p 402 FEHflHPYPKDSEKLMLSRQTGLTRSQISNWFINARVR 439
                         664559******************************88 PP
2BELL120.76.5e-39265336172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         e+qelq+k akL+ +l+eVd++Yk+y++q+q v+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi
  Sevir.9G138100.3.p 265 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQLVMSSFDMVAGSGAAKPYTAVALQTISRHFRCLKDAINDQI 336
                         689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.2E-57189334IPR006563POX domain
PfamPF075261.2E-50195332IPR006563POX domain
PROSITE profilePS5007112.001380443IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-27382452IPR009057Homeodomain-like
SMARTSM003894.8E-9383447IPR001356Homeobox domain
CDDcd000862.76E-12383444No hitNo description
SuperFamilySSF466898.98E-17384449IPR009057Homeodomain-like
PfamPF059202.9E-17400439IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MATYYPSPGS ERDSQTLYST ESGNASYPMP PTLGNLLYPN NASSGPYTEF SGIIQPQQNF  60
MDLPGHPSAM SHDSSSNEAT NMGTSLTEQR SFGPLKDMRN EMLMHLMDGA HSSGSDLIHN  120
DAHNTAQVEF GMLNNHNSTS VPSAPGQGLS LSLNTHILAP SYPYWSAKPD LLSPNSYQGD  180
DNRMKNMQSE ASRAIRNSKY LKAAQELLDE IVSVWKSVKQ KADKGPAESG KADGKETDGG  240
TKSEGVSSNP QESGANAAAE LSTAEKQELQ NKMAKLMAML DEVDRKYKHY YHQMQLVMSS  300
FDMVAGSGAA KPYTAVALQT ISRHFRCLKD AINDQIAVIR KKLGEDDSTS GKEGKLTRLR  360
YIDQQIRQQR AFQQYGMLQQ NAWRPQRGLP ENSVSILRAW LFEHFLHPYP KDSEKLMLSR  420
QTGLTRSQIS NWFINARVRL WKPMIEDMYK EEVGDVELDS NSSSDNGARS KDKAPSSEEK  480
EDLKTSTSQA CQSSQLDESK ANVGGMMSLG GAPAGSFHNE VNPEDSFMSL MLKAQRPGET  540
AGSSLLHHAV AHQSDESTQF MAYHLAELGR YSNNNVSLTL GLQHAENSLS SVPNTQTQPG  600
FPGVRDEDIY NATAPLNVTS TSSDYESTNQ MDQQQRQRFE PSPLMHDFVA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A9e-16389446158Homeobox protein Meis1
4xrs_B9e-16389446158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G138100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9571390.0EU957139.1 Zea mays clone 1583941 BEL1-related homeotic protein 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982177.10.0BEL1-like homeodomain protein 7
RefseqXP_004982178.10.0BEL1-like homeodomain protein 7
TrEMBLK4A6U70.0K4A6U7_SETIT; Uncharacterized protein
STRINGSi034602m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-117BEL1-like homeodomain 6