PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G119900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GeBP | ||||||||
Protein Properties | Length: 368aa MW: 39022.5 Da PI: 6.8733 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 83.9 | 2.2e-26 | 82 | 176 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 +fqr+wse+De+ +LqGl+ + +g d++ fy+ +++s+ +++ ql+eK+rrLK+K++ +++++ g +p+ ++hd+++++l+ Sevir.9G119900.1.p 82 KFQRIWSESDELRFLQGLLGC-GAQGLVFPRDLNVFYDRFSESMPQPYTRAQLSEKLRRLKNKYRSVSARVAGGLDPARLAPHDRDVLHLC 171 79*******************.556878888************************************************************ PP DUF573 93 kkiWg 97 +++W+ Sevir.9G119900.1.p 172 SRLWD 176 ****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.9E-24 | 83 | 176 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MASGQQALPV PAPVPPNPNP TAPADLTPPA ASAGARKLPI KRRSPRPSSS PPSSSSPASS 60 DPLRAPTAGG GGGSDQQQPP FKFQRIWSES DELRFLQGLL GCGAQGLVFP RDLNVFYDRF 120 SESMPQPYTR AQLSEKLRRL KNKYRSVSAR VAGGLDPARL APHDRDVLHL CSRLWDPANA 180 ATSPFASGAG SSGNKRRRAN PRGTPLPPPD ASGDCNSHDY NGISSSAPGL FPEVSNGEDM 240 FYLEQESGHL GDHEGAALVA DSRFGVIVQQ PEAAAALPNG IGNEMNGDQK MVVPCSNEHR 300 MANAVLDVFE ACLREAKSNG IINGGNADGS AEESELAKRW RVQRMDELDV LSQRLRLLVE 360 DAAAAGH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G119900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU967779 | 0.0 | EU967779.1 Zea mays clone 306034 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982018.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | K4ABK0 | 0.0 | K4ABK0_SETIT; Uncharacterized protein | ||||
STRING | Si036257m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8695 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 1e-12 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G119900.1.p |