PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G108800.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 352aa    MW: 38054.1 Da    PI: 6.4093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G108800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12172219355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  Sevir.9G108800.2.p 172 QDHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLSDAIKYVKQLQ 219
                         67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.885169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10172219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-18172237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17173230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.59E-14174223No hitNo description
SMARTSM003537.2E-15175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MATQWFSNMV MDEPSFFHQW QSDALLEQYT EQQIAVAFGQ GEVDQAVAAA LTMPLQQPAP  60
AAEHRPRKAA KVNTSWDSCI TEQGSPADSS SPTILSFGGH AAAAAFAKAE AHQVPSAPYY  120
GAPAKAPKQE VVDAGAPSFH QERQAKRSYD AMVAEAAKVP VPATTRPASQ NQDHILAERK  180
RREKLSQRFI ALSKIVPGLK KMDKASVLSD AIKYVKQLQD QVKGLEDEAR RRPVEAAVLV  240
KKSQLSADDD DGSSCDENFV GAEAAGTLPE IEARVSDRTV LVRIHCENRK GALIAALSEV  300
ERLGLTIMNT NVLPFTTSSL DITIMAMAGD DFCLSAKDIV KKLNQAFKSS F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182ERKRRE
2178183RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G108800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365520.0BT036552.2 Zea mays full-length cDNA clone ZM_BFb0123D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661241.10.0transcription factor bHLH18
TrEMBLK4ABY60.0K4ABY6_SETIT; Uncharacterized protein
STRINGSi036393m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-55bHLH family protein