 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.9G107600.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
TALE |
| Protein Properties |
Length: 357aa MW: 39186.1 Da PI: 6.9232 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.9G107600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 26.9 | 8.1e-09 | 284 | 319 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55
+k +yps++++ LA+++gL+ +q+ +WF N+R ++
Sevir.9G107600.1.p 284 YKWPYPSETQKVALAESTGLDLKQINNWFINQRKRH 319
5679*****************************885 PP
|
| 2 | ELK | 37.1 | 6.6e-13 | 239 | 260 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELKh+Ll+KYsgyL+sLkqE+s
Sevir.9G107600.1.p 239 ELKHHLLKKYSGYLSSLKQELS 260
9*******************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MEEITHHFGV GASGGHGHVQ HHLHHHHPWG SSLSAVVAPP PQTPPSAGLP LTLNTAATGN 60
SGGAGGNPVL QLANGGGLLD ACVKAKEPSS SSPYAGDVDA IKAKIISHPH YYSLLAAYLE 120
CQKVGAPPEV SARLTAMAQE LEARQRTALG GLGAATEPEL DQFMEAYHEM LVKFREELTR 180
PLQEAMEFMR RVESQLNSLS ISGRSLRNIL SSGSSEEDQE GSGGETEIPE VDAHGVDQEL 240
KHHLLKKYSG YLSSLKQELS KKKKKGKLPK EARQQLLSWW DLHYKWPYPS ETQKVALAES 300
TGLDLKQINN WFINQRKRHW KPSEEMHHLM MDGYHTTGAF YMDGHFINDG GLYRLG*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Binds to RNA (PubMed:17965274). Possible transcription factor that regulates genes involved in development. Mutations in KN-1 alter leaf development. Foci of cells along the lateral vein do not differentiate properly but continue to divide, forming knots. May participate in the switch from indeterminate to determinate cell fates. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:17965274}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ317420 | 0.0 | DQ317420.1 Setaria italica KNOTTED1 homeodomain protein (KN1) mRNA, partial cds. |
| Publications
? help Back to Top |
- Lowe B,Mathern J,Hake S
Active Mutator elements suppress the knotted phenotype and increase recombination at the Kn1-O tandem duplication.
Genetics, 1992. 132(3): p. 813-22
[PMID:1334895] - Sinha N,Hake S
Mutant characters of knotted maize leaves are determined in the innermost tissue layers.
Dev. Biol., 1990. 141(1): p. 203-10
[PMID:2391001] - Chen H,Jackson D,Kim JY
Identification of evolutionarily conserved amino acid residues in homeodomain of KNOX proteins for intercellular trafficking.
Plant Signal Behav, 2014. 9(3): p. e28355
[PMID:24603432] - Sinha NR,Williams RE,Hake S
Overexpression of the maize homeo box gene, KNOTTED-1, causes a switch from determinate to indeterminate cell fates.
Genes Dev., 1993. 7(5): p. 787-95
[PMID:7684007] - Greene B,Walko R,Hake S
Mutator insertions in an intron of the maize knotted1 gene result in dominant suppressible mutations.
Genetics, 1994. 138(4): p. 1275-85
[PMID:7896105] - Mathern J,Hake S
Mu element-generated gene conversions in maize attenuate the dominant knotted phenotype.
Genetics, 1997. 147(1): p. 305-14
[PMID:9286690]
|
