PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G101100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 309aa    MW: 32982.3 Da    PI: 8.42
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G101100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.52.5e-15203239135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Sevir.9G101100.1.p 203 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 239
                         **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.3E-770105IPR010399Tify domain
PROSITE profilePS5132014.67970105IPR010399Tify domain
PfamPF062002.4E-1172104IPR010399Tify domain
PROSITE profilePS5101713.374132174IPR010402CCT domain
PfamPF062031.7E-15132172IPR010402CCT domain
SMARTSM004012.6E-10197251IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-10200255No hitNo description
Gene3DG3DSA:3.30.50.105.5E-14201241IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440203230IPR000679Zinc finger, GATA-type
CDDcd002021.20E-12203249No hitNo description
PfamPF003204.6E-13203239IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MCTVHVRGSC PSLRTCAQTQ PVRASPPSDP QPMAAEPAAD DHDPRPTPAD GPAAAGGGDA  60
SASAAAEALM SAASEQLTMV YQGDVFVFDP VPPQKVQAVL LVLGGYEVPS GLVNMTVPTA  120
NDEKSTTVAA RRVASLMRFR EKRKERCFDK RIRYNVRKEV AQKMKRRKGQ FAGRSDFGDG  180
ACSSVACGSP PNGEDDHFRE THCQNCGISS RLTPAMRRGP AGPRSLCNAC GLMWANKGTL  240
RSPINAPKMT LQHPANPSKT GDTDDKNSTV LPVEHNQATV KTDSGMMPEQ EQKLDILPPT  300
KEDIKSVS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G101100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9582860.0EU958286.1 Zea mays clone 1683206 GATA transcription factor 25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981867.10.0GATA transcription factor 19
SwissprotQ0DNU11e-141GAT19_ORYSJ; GATA transcription factor 19
TrEMBLK4ACZ00.0K4ACZ0_SETIT; Uncharacterized protein
STRINGSi036747m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-53ZIM-like 1