PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G096400.4.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 371aa MW: 40294.3 Da PI: 9.0385

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G096400.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.1	1.3e-07	221	265	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L ++ + K +K +i++ A YI++L Sevir.9G096400.4.p 221 HMMRERQRREKLSQSYADLYAMVAAR-----SKGDKNSIVQSAAIYIHEL 265 889********************7.....6999999*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.395	216	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.2E-11	216	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-9	220	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.04E-7	220	270	No hit	No description
Pfam	PF00010	2.2E-5	221	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-5	222	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MPGSIMFGGR RRGGDQEMGE TLMRNSELET VVGAGIAGSF VFRQATRSPP LRVSPPSPSI 60 ATPAATAPAT GKPSDRASGA VVIRPEMQMD SYFYAGCFHD EVPFYPHGAA PPSPELPFGL 120 IASPGEPEPP FAPTAAALQN QNYSVSGTEL LLQSMGAGAT HVSGGDAHVH TQVFDDTLSG 180 RMGGGRDQDQ TMGEEGEDEP RQQRRQEPAG ATVESSRGFR HMMRERQRRE KLSQSYADLY 240 AMVAARSKGD KNSIVQSAAI YIHELRGARE QLRRRNEELK ARILGHDAGR QCVKVQFEVD 300 EPASAVDSMI SALRRLKGMD VRARGIRSTM SGRRLWTEMN VETTVGKRMH KQLSGLRQQL 360 DELVKSSASS *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MPGSIMFGGR RRGGDQEMGE TLMRNSELET VVGAGIAGSF VFRQATRSPP LRVSPPSPSI  60
ATPAATAPAT GKPSDRASGA VVIRPEMQMD SYFYAGCFHD EVPFYPHGAA PPSPELPFGL  120
IASPGEPEPP FAPTAAALQN QNYSVSGTEL LLQSMGAGAT HVSGGDAHVH TQVFDDTLSG  180
RMGGGRDQDQ TMGEEGEDEP RQQRRQEPAG ATVESSRGFR HMMRERQRRE KLSQSYADLY  240
AMVAARSKGD KNSIVQSAAI YIHELRGARE QLRRRNEELK ARILGHDAGR QCVKVQFEVD  300
EPASAVDSMI SALRRLKGMD VRARGIRSTM SGRRLWTEMN VETTVGKRMH KQLSGLRQQL  360
DELVKSSASS *

Functional Description ? help Back to Top
Source	Description
UniProt	May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269\|PubMed:21332845}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G096400.4.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269\|PubMed:21332845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ726793	1e-129	KJ726793.1 Zea mays clone pUT2279 bHLH transcription factor (bHLH103) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022678746.1	0.0	transcription factor BHLH148-like isoform X2
Swissprot	Q75KV9	1e-85	BH148_ORYSJ; Transcription factor BHLH148
TrEMBL	A0A368SF24	0.0	A0A368SF24_SETIT; Uncharacterized protein
STRING	Si036716m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	5e-19	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G096400.4.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]