PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G096400.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 315aa    MW: 34246.1 Da    PI: 6.2509
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G096400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.51e-07135179554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h +rEr+RR+++ ++++ L  ++  +      K +K +i++ A  YI++L
  Sevir.9G096400.2.p 135 HMMRERQRREKLSQSYADLYAMVAAR-----SKGDKNSIVQSAAIYIHEL 179
                         889**********************7.....6999999*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.395130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-12130198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-9134197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-7134184No hitNo description
PfamPF000101.7E-5135179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-5136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MQMDSYFYAG CFHDEVPFYP HGAAPPSPEL PFGLIASPGE PEPPFAPTAA ALQNQNYSVS  60
GTELLLQSMG AGATHVSGGD AHVHTQVFDD TLSGRMGGGR DQDQTMGEEG EDEPRQQRRQ  120
EPAGATVESS RGFRHMMRER QRREKLSQSY ADLYAMVAAR SKGDKNSIVQ SAAIYIHELR  180
GAREQLRRRN EELKARILGH DAGRQCVKVQ FEVDEPASAV DSMISALRRL KGMDVRARGI  240
RSTMSGRRLW TEMNVETTIA AGEVEKAVEE ALMQEVERKQ PAEAGSGGPG FPGTSSSGGR  300
GWGPQASSHV QNVF*
Functional Description ? help Back to Top
Source Description
UniProtMay act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G096400.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9556231e-151EU955623.1 Zea mays clone 1539864 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678744.10.0transcription factor BHLH148-like isoform X1
RefseqXP_022678745.10.0transcription factor BHLH148-like isoform X1
SwissprotQ75KV91e-102BH148_ORYSJ; Transcription factor BHLH148
TrEMBLA0A368SF240.0A0A368SF24_SETIT; Uncharacterized protein
TrEMBLK4ACV90.0K4ACV9_SETIT; Uncharacterized protein
STRINGSi036716m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.12e-19bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]