PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 315aa MW: 34246.1 Da PI: 6.2509

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G096400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.5	1e-07	135	179	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L ++ + K +K +i++ A YI++L Sevir.9G096400.2.p 135 HMMRERQRREKLSQSYADLYAMVAAR-----SKGDKNSIVQSAAIYIHEL 179 889********************7.....6999999*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.395	130	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.16E-12	130	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-9	134	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.03E-7	134	184	No hit	No description
Pfam	PF00010	1.7E-5	135	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-5	136	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MQMDSYFYAG CFHDEVPFYP HGAAPPSPEL PFGLIASPGE PEPPFAPTAA ALQNQNYSVS 60 GTELLLQSMG AGATHVSGGD AHVHTQVFDD TLSGRMGGGR DQDQTMGEEG EDEPRQQRRQ 120 EPAGATVESS RGFRHMMRER QRREKLSQSY ADLYAMVAAR SKGDKNSIVQ SAAIYIHELR 180 GAREQLRRRN EELKARILGH DAGRQCVKVQ FEVDEPASAV DSMISALRRL KGMDVRARGI 240 RSTMSGRRLW TEMNVETTIA AGEVEKAVEE ALMQEVERKQ PAEAGSGGPG FPGTSSSGGR 300 GWGPQASSHV QNVF*

Functional Description ? help Back to Top
Source	Description
UniProt	May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269\|PubMed:21332845}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G096400.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269\|PubMed:21332845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU955623	1e-151	EU955623.1 Zea mays clone 1539864 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022678744.1	0.0	transcription factor BHLH148-like isoform X1
Refseq	XP_022678745.1	0.0	transcription factor BHLH148-like isoform X1
Swissprot	Q75KV9	1e-102	BH148_ORYSJ; Transcription factor BHLH148
TrEMBL	A0A368SF24	0.0	A0A368SF24_SETIT; Uncharacterized protein
TrEMBL	K4ACV9	0.0	K4ACV9_SETIT; Uncharacterized protein
STRING	Si036716m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	2e-19	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G096400.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]