PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G082800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 426aa    MW: 45109.8 Da    PI: 6.4279
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G082800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.6e-30191247259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK+ k++e prsYY+Ct  gCpvkk vers  d+ ++eitY+g+Hnh+
  Sevir.9G082800.1.p 191 KDGYSWRKYGQKQLKDAESPRSYYKCTRDGCPVKKVVERSF-DGFITEITYKGRHNHP 247
                         8****************************************.***************8 PP

2WRKY103.51.2e-32323381159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg++ prsYY+Ct  +C+v+k++er+++dp++v +tY+g+Hnh+
  Sevir.9G082800.1.p 323 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADNCNVRKQIERASTDPRCVLTTYTGRHNHD 381
                         59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.169185249IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.0E-27187249IPR003657WRKY domain
SuperFamilySSF1182907.19E-24189249IPR003657WRKY domain
SMARTSM007744.9E-32190248IPR003657WRKY domain
PfamPF031063.1E-23191247IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-33308383IPR003657WRKY domain
SuperFamilySSF1182904.97E-28316383IPR003657WRKY domain
PROSITE profilePS5081135.439318383IPR003657WRKY domain
SMARTSM007741.5E-35323382IPR003657WRKY domain
PfamPF031063.5E-24324381IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MDDRRGRGDA MRQRPFASAA QEQERVFDGG GGAGHGPAFG GDFDQGSSLM ALLGAGGVSS  60
SQPSLPTWGV EEVTAASAIN LVPQSFSMAN YAPPVPSYQQ PTSFAPSPLG GRMDPYPPYL  120
LSDPPPQWPP PRSTAAAASS LPPQNFAVLL PRYDQDMQQL RAAAFFGAGS SQSQAALPLL  180
PPAPAIEQPA KDGYSWRKYG QKQLKDAESP RSYYKCTRDG CPVKKVVERS FDGFITEITY  240
KGRHNHPRPQ ERGHAAGGND ALAAAAEDDV EGLSDDDDDA LHEDDLDGGH GAPGMGADGG  300
EGGQRVVKKP KIIIQTPSEV DLLDDGYRWR KYGQKVVKGN PRPRSYYKCT ADNCNVRKQI  360
ERASTDPRCV LTTYTGRHNH DPPGRGNEAP ATAAAAAGGH PAPSAGGSGT FQQTGGGARQ  420
LKEES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-33192383877Probable WRKY transcription factor 4
2lex_A1e-33192383877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G082800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3638032e-78AK363803.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2019A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661260.10.0probable WRKY transcription factor 26
TrEMBLA0A368SED50.0A0A368SED5_SETIT; Uncharacterized protein
STRINGSi034188m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.12e-63WRKY DNA-binding protein 58