PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G082200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 402aa    MW: 42060.8 Da    PI: 8.8383
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G082200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.0007166211454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         a n+r r R +++ +++  L++l+ +      +K + a++L +A  YI+ L
  Sevir.9G082200.1.p 166 ATNKRPRVRKEKLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 211
                         679**********************98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.163162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-10165220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-6167218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.53E-4168216No hitNo description
SMARTSM003530.0051168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MVKEEEIVAE AGGRGYMDLL GLGGEDYLLC MSPSSYFSSS VVSTATTTSA TPAAASSPTC  60
SSYLDLAPAY HQMLSFAGQG QYHGGDGIFG LQYYGGDQAI PMAVPVPQKS SPTTECSSSI  120
SSMSSSPPAT TVSAISSPKP QAFKKKGSRS SDQRKAAPAA VATTAATNKR PRVRKEKLGE  180
RIIALQQLVS PFGKSDTASV LHEALGYIRF LHDQVQIHTN KRGAPCLVSC HAYVSQCSNV  240
CILCVYAPAC TVMAAGLVAG SLVHALLGTY WLWSLFFVSG SELAVHAAAP AGLGARSAVL  300
VLCCCIVAGA GERGRDGGGA AAADERPEEP GAVPGADRVH GACRRRRSRP RPRQRRRPLV  360
RGGGDGEGGR GEQGCCCCRS AAWWWSWSPR APGLADRPRH T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343357RRRRSRPRPRQRRRP
2346356RSRPRPRQRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G082200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981690.11e-109transcription factor bHLH113 isoform X2
TrEMBLK4ACQ91e-108K4ACQ9_SETIT; Uncharacterized protein
STRINGSi036666m1e-108(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80822529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-18bHLH family protein