PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G073300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 343aa    MW: 37864.5 Da    PI: 6.5125
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G073300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-092562912055
                         HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  Sevir.9G073300.1.p 256 YKWPYPSETEKMALAETTGLDQKQINNWFINQRKRH 291
                         4679*****************************885 PP
2ELK41.62.7e-14211231121
                 ELK   1 ELKhqLlrKYsgyLgsLkqEF 21 
                         ELKhqLlrKY+gyLg+L+qEF
  Sevir.9G073300.1.p 211 ELKHQLLRKYGGYLGGLRQEF 231
                         9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.9E-2079123IPR005540KNOX1
PfamPF037902.0E-2180121IPR005540KNOX1
SMARTSM012561.9E-28131182IPR005541KNOX2
PfamPF037911.6E-23136181IPR005541KNOX2
PfamPF037893.0E-10211231IPR005539ELK domain
PROSITE profilePS5121311.575211231IPR005539ELK domain
SMARTSM011882.0E-7211232IPR005539ELK domain
PROSITE profilePS5007112.989231294IPR001356Homeobox domain
SMARTSM003897.3E-12233298IPR001356Homeobox domain
SuperFamilySSF466891.58E-19233303IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-27236297IPR009057Homeodomain-like
CDDcd000862.43E-12243294No hitNo description
PfamPF059209.5E-17251290IPR008422Homeobox KN domain
PROSITE patternPS000270269292IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDSFRDLGGG GSSASKASFL QLPLLPASSS AQGFPSPDGH HHSSRLALQQ LLADPSAAQH  60
SHRKDGSLAQ GEISPVDAET IKTKIMSHPQ YSALVAAYLD CQKVGAPPDV SDRLSAMAAK  120
LDAQPGPSRR RHEPTRADPE LDQFMEAYCN MLVKYQEELA RPIQEAAEFF KSVERQLDSI  180
TDSNCEGAGS SEDDQDASCP EEIDPCAEDK ELKHQLLRKY GGYLGGLRQE FTKRKKKGKL  240
PKEARQKLLH WWELHYKWPY PSETEKMALA ETTGLDQKQI NNWFINQRKR HWKPTSEDMP  300
FAMMEAAAAA GGFHAPQGAA ALYMADSRTA FMAPDGMYRL GS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G073300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0366810.0BT036681.1 Zea mays full-length cDNA clone ZM_BFb0131G23 mRNA, complete cds.
GenBankEU9663730.0EU966373.1 Zea mays clone 293957 homeobox protein rough sheath 1 mRNA, complete cds.
GenBankJX4699310.0JX469931.1 Zea mays subsp. mays clone UT3189 HB-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981606.10.0homeobox protein knotted-1-like 12
SwissprotO650341e-118KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-118KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
SwissprotQ10ED21e-119KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBLA0A368SE340.0A0A368SE34_SETIT; Uncharacterized protein
STRINGPavir.Ia00428.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-80KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  6. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  7. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]