PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G034800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | AP2 | ||||||||
Protein Properties | Length: 429aa MW: 47027.1 Da PI: 7.151 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.9e-17 | 111 | 160 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Sevir.9G034800.1.p 111 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 160 78*******************......55************************998 PP | |||||||
2 | AP2 | 42.6 | 1.5e-13 | 203 | 253 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+++++g Sevir.9G034800.1.p 203 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDRAALRFNG 253 89********.7******...5...334336**********99***********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-9 | 111 | 160 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.66E-11 | 111 | 167 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-15 | 111 | 168 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.2E-31 | 112 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.728 | 112 | 168 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-17 | 112 | 168 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.9E-9 | 203 | 253 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-17 | 203 | 262 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.06E-26 | 203 | 263 | No hit | No description |
SMART | SM00380 | 5.2E-33 | 204 | 267 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.436 | 204 | 261 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-16 | 204 | 261 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 205 | 216 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 243 | 263 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MVLDLNVASP EDSGTSSSSV LNSGDGGFRF GLLGSPVDDD DCSGEIAPGA SSGFMTRQLF 60 PPPTPPTEPE RAAAPVPVWQ PRRAEDPAVA QRPPAAVAAK KTRRGPRSRS SQYRGVTFYR 120 RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG LEADINFSLG DYEDDLKQMR 180 NWTKEEFVHI LRRQSTGFAR GSSKYRGVTL HKCGRWEARM GQLLGKKYIY LGLFDSEVEA 240 ARAYDRAALR FNGREAVTNF EPSSYNAGDS LPDTESEAIV DADAVDLDLR ISQPNVQDTK 300 RDNIIVGLQP TYDSPESSNT MTSQPMSSSS LWPMYHQSPA VPSHHQRLYS SACPGFFPNH 360 QERTMERRPE VGAQPFPTWA WQTQGPPHMP LHHSAASSGF STAVGGANGG GPPSHPPAPS 420 FPNYQFFS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G034800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727838 | 0.0 | KJ727838.1 Zea mays clone pUT5791 AP2-EREBP transcription factor (EREB11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981271.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 | ||||
Swissprot | Q84TB5 | 0.0 | AP22_ORYSJ; APETALA2-like protein 2 | ||||
TrEMBL | A0A368SCZ6 | 0.0 | A0A368SCZ6_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J23520.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2448 | 38 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-89 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G034800.1.p |
Publications ? help Back to Top | |||
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