PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GRAS

Protein Properties

Length: 645aa MW: 73069.5 Da PI: 6.641

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G031000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	371.7	9.5e-114	273	643	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++lL++cA+a + +d+++a++lL+++++++s +gd+ qRla+yf+++L+arla+++s++y++l++++ts + e l a+ l+++++ + Sevir.9G031000.1.p 273 TTLLIHCAQAAAIDDHRNANELLKQIRKHSSATGDAGQRLAHYFANGLEARLAGTGSSIYRSLTSKRTS---TGEMLRAFGLYVKACSFRL 360 689**********************************************************999998...899************ PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 +sh +aN +Il+a ++e r+HiiD+++++G+QWp L+q L++R +gppslRiTg++ p +g +e++e+tg+rL+++A+ +++pfe+++ Sevir.9G031000.1.p 361 ISHYVANTTILNASKSEARLHIIDYGVQYGFQWPVLMQRLSKRCGGPPSLRITGIDFPLPGfrPAERIEATGRRLHEYARMFNIPFEYQA- 450 ******************************************************99999***********************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 +a++++++++e+L++k++E l+Vn+ +++ +++de+v+ +s+r++vL+++++l+P+++v+ + +n++ F++rf ea+ ++s++fd+le Sevir.9G031000.1.p 451 IASKWDTIQVEDLKIKSDEYLVVNCLYRMRNMMDETVTDDSPRTRVLNTIRKLNPHLFVHGIVNGTYNAPFFVTRFKEAMFFFSSIFDMLE 541 7************************************************************************************** PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 a+++r +e+r +E e++gre+ nv+aceg+er+er et+++W++r +aGF++++l+e+++k a++ ++k + + + v+e+++++++gWk Sevir.9G031000.1.p 542 ANASRMDEHRLLIESEFFGREALNVIACEGTERIERPETYKQWQMRNLRAGFRQLRLNEEIMKRARYKVSKSYHRDFLVDEDNKWMLQGWK 632 *********************************************************************999*********** PP GRAS 364 drpLvsvSaWr 374 +r ++++SaW+ Sevir.9G031000.1.p 633 GRIIFALSAWT 643 ********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.146	246	623	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-111	273	643	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
MMDPGSRDNI DFGDQLSTPN PPTPHMINFS LQQQSQVQYF PSYGFHSHNP PVSSHPSPPW 60 VMLGCTTPSP ASTTTTELDS ADDADDAVLA YINQFLLEDE DDESYPVSSA SVEDSALLAV 120 EKPFVDILKS AKPIMAQAYE MKSWMTDDCE STGSRGFHDV VTSNQNSSQL PSQMVVECSV 180 GATHKGRKTK NPHDDDLEME ERKSKQLALC DEETVREMFD KVLLCTDANC EFHSPMPAEA 240 QINGRYVKGS GNRRGRRKGR SGTSPEEEAV DLTTLLIHCA QAAAIDDHRN ANELLKQIRK 300 HSSATGDAGQ RLAHYFANGL EARLAGTGSS IYRSLTSKRT STGEMLRAFG LYVKACSFRL 360 ISHYVANTTI LNASKSEARL HIIDYGVQYG FQWPVLMQRL SKRCGGPPSL RITGIDFPLP 420 GFRPAERIEA TGRRLHEYAR MFNIPFEYQA IASKWDTIQV EDLKIKSDEY LVVNCLYRMR 480 NMMDETVTDD SPRTRVLNTI RKLNPHLFVH GIVNGTYNAP FFVTRFKEAM FFFSSIFDML 540 EANASRMDEH RLLIESEFFG REALNVIACE GTERIERPET YKQWQMRNLR AGFRQLRLNE 600 EIMKRARYKV SKSYHRDFLV DEDNKWMLQG WKGRIIFALS AWTS*

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

MMDPGSRDNI DFGDQLSTPN PPTPHMINFS LQQQSQVQYF PSYGFHSHNP PVSSHPSPPW  60
VMLGCTTPSP ASTTTTELDS ADDADDAVLA YINQFLLEDE DDESYPVSSA SVEDSALLAV  120
EKPFVDILKS AKPIMAQAYE MKSWMTDDCE STGSRGFHDV VTSNQNSSQL PSQMVVECSV  180
GATHKGRKTK NPHDDDLEME ERKSKQLALC DEETVREMFD KVLLCTDANC EFHSPMPAEA  240
QINGRYVKGS GNRRGRRKGR SGTSPEEEAV DLTTLLIHCA QAAAIDDHRN ANELLKQIRK  300
HSSATGDAGQ RLAHYFANGL EARLAGTGSS IYRSLTSKRT STGEMLRAFG LYVKACSFRL  360
ISHYVANTTI LNASKSEARL HIIDYGVQYG FQWPVLMQRL SKRCGGPPSL RITGIDFPLP  420
GFRPAERIEA TGRRLHEYAR MFNIPFEYQA IASKWDTIQV EDLKIKSDEY LVVNCLYRMR  480
NMMDETVTDD SPRTRVLNTI RKLNPHLFVH GIVNGTYNAP FFVTRFKEAM FFFSSIFDML  540
EANASRMDEH RLLIESEFFG REALNVIACE GTERIERPET YKQWQMRNLR AGFRQLRLNE  600
EIMKRARYKV SKSYHRDFLV DEDNKWMLQG WKGRIIFALS AWTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-48	266	643	13	379	Protein SCARECROW
5b3h_A	4e-48	266	643	12	378	Protein SCARECROW
5b3h_D	4e-48	266	643	12	378	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G031000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981240.1	0.0	scarecrow-like protein 30
Refseq	XP_022678638.1	0.0	scarecrow-like protein 30
Swissprot	Q9XE58	1e-169	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	K4A6X2	0.0	K4A6X2_SETIT; Uncharacterized protein
STRING	Si034627m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13841	25	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-169	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Sevir.9G031000.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]