PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sevir.9G025200.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 425aa MW: 46079.1 Da PI: 5.0958

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G025200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	29.9	1.6e-09	25	125	32	127
NAM 32 evikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgk....rknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapk 115 +++++vd++++ P+dL + + + +++ wy ++ ++ k+a+g+ r++ a+++ W++ k+v+ ++ g+ L + +++ ++ Sevir.9G025200.1.p 25 HFVHHVDVCSAAPEDLVAdlEPAPGTSVWYLYCVKKYKSAHGRpgghRQRAiAASDTCWHSEAGAKDVKG--SQGGGTVCNLSYGRKDGRS 113 4699**********85233344778*****9999654444266556677999******87..66689999**999 PP NAM 116 gektdWvmheyr 127 ++ W+m ey Sevir.9G025200.1.p 114 FTRLGWCMMEYD 125 ***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	14.843	1	141	IPR003441	NAC domain
SuperFamily	SSF101941	4.18E-14	21	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MAAEDTGDDA SIALLHRLRA GATVHFVHHV DVCSAAPEDL VADLEPAPGT SVWYLYCVKK 60 YKSAHGRPGG HRQRAIAASD TCWHSEAGAK DVKGSQGGGT VCNLSYGRKD GRSFTRLGWC 120 MMEYDDATGG GDHVLCKIYR SPRAQGKPSS AASKTSSGSK RKAGGEHTEA RPAKLLHEQD 180 TFFTNDYAMP STVAQVNVGG EEEQHLSTQD GEFVQTMYGL LPSVVAQINV EEWIRGAEMF 240 GGDEEQQSSK PEQDDWSVKD YLLAPETTSG EASGVPATLT PPDDADLFDV ELDSEFSVLQ 300 EQHTWQMQQP HAAEADPMAE FAHSLQTPRA MAMALIRRTE DSVVLVREVR LRGSWMPPAP 360 WRRPGAPSGA WWSTPAGSSS EERGDVVTAS FEVPVRRCRR AADSYLLVAA GAGFLYCSEL 420 HHDA*

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MAAEDTGDDA SIALLHRLRA GATVHFVHHV DVCSAAPEDL VADLEPAPGT SVWYLYCVKK  60
YKSAHGRPGG HRQRAIAASD TCWHSEAGAK DVKGSQGGGT VCNLSYGRKD GRSFTRLGWC  120
MMEYDDATGG GDHVLCKIYR SPRAQGKPSS AASKTSSGSK RKAGGEHTEA RPAKLLHEQD  180
TFFTNDYAMP STVAQVNVGG EEEQHLSTQD GEFVQTMYGL LPSVVAQINV EEWIRGAEMF  240
GGDEEQQSSK PEQDDWSVKD YLLAPETTSG EASGVPATLT PPDDADLFDV ELDSEFSVLQ  300
EQHTWQMQQP HAAEADPMAE FAHSLQTPRA MAMALIRRTE DSVVLVREVR LRGSWMPPAP  360
WRRPGAPSGA WWSTPAGSSS EERGDVVTAS FEVPVRRCRR AADSYLLVAA GAGFLYCSEL  420
HHDA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G025200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A368SCE0	0.0	A0A368SCE0_SETIT; Uncharacterized protein
STRING	Si039285m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4574	6	32

Link Out ? help Back to Top
Phytozome	Sevir.9G025200.1.p