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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G019000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 369aa MW: 40072.9 Da PI: 6.1881 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.1 | 1.9e-07 | 129 | 151 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F+r nL+ H+r H Sevir.9G019000.1.p 129 HSCKVCGKGFKRDANLRMHMRGH 151 79*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.11E-5 | 127 | 154 | No hit | No description |
SMART | SM00355 | 0.0017 | 129 | 151 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.321 | 129 | 156 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.9E-6 | 129 | 155 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 131 | 151 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 44 | 182 | 215 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 27 | 220 | 242 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MEVCSNLEGA TETHQQQDDP RTLLTYLTFL EQKIAHLRGI ICSAPRPPRQ IVSAELSCIA 60 VQLVSISKSL AAASGATAEE AAASPNEGDS DSSDRDLHAE EDDDDRLPPA GSYEVIELGK 120 EEILAPHVHS CKVCGKGFKR DANLRMHMRG HGEEYKTAAA LAKPATGRDA PPPPGAAARC 180 LYSCPFVGCK RNREHRSFQP LKTAVCVKNH YRRSHCDKSY TCRRCNVKRF SVLADLRTHE 240 KHCGRDRWVC SCGTSFSRKD KLFGHVAAFD GHAPALPPEE DDHSAANGHG SAFDQLLMDT 300 EAVSRMASTE CFSDSMFDGL SCSDIKGFAL NVDGQCLDEG RGSLSPMDLY SCDYPGFDLF 360 GAPGIADF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G019000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 1e-146 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986133.2 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A368SCF3 | 0.0 | A0A368SCF3_SETIT; Uncharacterized protein | ||||
STRING | Si036555m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 3e-91 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G019000.1.p |