PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G005800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 373aa    MW: 40235.1 Da    PI: 6.6406
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G005800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.7e-31177235259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+
  Sevir.9G005800.1.p 177 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 235
                         699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.247171237IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-30174237IPR003657WRKY domain
SuperFamilySSF1182901.7E-26175237IPR003657WRKY domain
SMARTSM007744.3E-38176236IPR003657WRKY domain
PfamPF031068.2E-26178235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDMEAPVVAG TAQGDLADVV ARAGAIMAAA PPSTSHPRRP PPPSSLAAAD HMSSSAAAMA  60
AGQIMVPSYD EEPRPACSDA VMFDPYLPSS PATAPPRGGY WLPPQHQLAL QISQHACYAR  120
DVAMAGAATD VDGDEAMRIS PAAHQIMKRK NEVKRVVCIP ALPPTSSRPG GGEVIPSDLW  180
AWRKYGQKPI KGSPYPRGYY RCSSSKGCMA RKQVERSRSD PNMLVITYTA EHNHPWPMQR  240
NVLAGYSRPH THTSTNCKKK NSYRDVGPIT SSPSPPSKNN ANYYSEHNAV SSGNNLECQQ  300
TTDMMEGNAA GYVAYTIGAL DDEEDVAMHQ PMSCNSIQTA DEVFAELEEL EPSNPASANI  360
YSRGVSYEWH KF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-24150237279Disease resistance protein RRS1
5w3x_D4e-24150237279Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G005800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980994.10.0probable WRKY transcription factor 14
TrEMBLA0A368SBP90.0A0A368SBP9_SETIT; Uncharacterized protein
STRINGSi038727m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-53WRKY DNA-binding protein 35