PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G262300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 278aa    MW: 29176.4 Da    PI: 6.8691
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G262300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000157092123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  Sevir.8G262300.1.p 70 YSCTFCQREFRSAQALGGHMNVH 92
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.78E-66797No hitNo description
Gene3DG3DSA:3.30.160.608.4E-46895IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00537092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1987097IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MNSSIAMDRI GSYWGMWGAR RSTSSSSTAS PITAWAAAAA AGGEPSWEEQ AFERDAAAHL  60
GGCVWPPRSY SCTFCQREFR SAQALGGHMN VHRRDRALLR QGGSSPDAPN DQPQEGALLY  120
RAASSPSTTT AATNAAGTAA GSAANKGGAK NTTTPPATSY LSTIIKESKN KLLMSMPAAP  180
VEMREDHCDL ADNNGEESAR TKRRRLDHPS AAALLIFVQP VAEVTACESS QGLQGGVDHD  240
AKVPQATIPS PSSSSLLLVD QHEVDLELRL GTTPKVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-136592229superman protein
2l1o_A8e-136592229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201205KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G262300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0387167e-90BT038716.1 Zea mays full-length cDNA clone ZM_BFb0313F12 mRNA, complete cds.
GenBankEU9721097e-90EU972109.1 Zea mays clone 375181 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980091.10.0zinc finger protein 10
TrEMBLK3ZJI80.0K3ZJI8_SETIT; Uncharacterized protein
STRINGSi026741m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-22C2H2 family protein