PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G178800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 994aa    MW: 113055 Da    PI: 6.5675
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G178800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.11.2e-20821880258
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                          DgynWr YGqKe+ g ++pr YY C ++   +C+++k+v++ +ed ++++++Y+g H++
  Sevir.8G178800.1.p 821 YDGYNWRMYGQKEIPGPKHPRVYYLCMHHqsqRCTATKQVQCRDEDSTLFDVIYHGMHTC 880
                         5**************************988889*************************98 PP
2WRKY825.9e-26910970158
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                         +dDgy+WrKY qKev g+++pr+YYrCt++   gC ++k+v+r++edp v+e+tY+g H++
  Sevir.8G178800.1.p 910 VDDGYSWRKYAQKEVLGANYPRAYYRCTHRhsqGCAATKQVQRCNEDPMVFEVTYRGIHTC 970
                         59***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147981.42E-264134No hitNo description
SuperFamilySSF525401.33E-54153432IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.9E-20174341IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.6E-55184460IPR002182NB-ARC
PRINTSPR003641.6E-15192207No hitNo description
PRINTSPR003641.6E-15268282No hitNo description
PRINTSPR003641.6E-15367381No hitNo description
Gene3DG3DSA:3.80.10.109.4E-19525805IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520472.04E-28549813No hitNo description
PRINTSPR003641.6E-15574590No hitNo description
PROSITE profilePS5081117.568815878IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-21816881IPR003657WRKY domain
SuperFamilySSF1182902.88E-19819880IPR003657WRKY domain
SMARTSM007744.0E-25820882IPR003657WRKY domain
PfamPF031067.6E-20822880IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.1E-27899971IPR003657WRKY domain
PROSITE profilePS5081122.171905968IPR003657WRKY domain
SuperFamilySSF1182901.15E-23907970IPR003657WRKY domain
SMARTSM007741.3E-37910972IPR003657WRKY domain
PfamPF031066.8E-24911970IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 994 aa     Download sequence    Send to blast
MEFATGAIGT LLPKLGMLLK EEYDLQKSVK EGIRFLMAEL ECMQVGLKKV SNMPLDQLDE  60
LVKIWARDVR ELSYDMEDIV DTFMLRVDGL EPNKKHDIKG LVQRCCNSLS KVKICHSIGN  120
KIKYIKSQVE EVKKRHDRYR IDDVIAQHPT VDPRIFTLFE EVTNLVGIGK TSNDLIKRLF  180
GGDDSTNKKL KIVSIVGFGG LGKTTLAKAV FDMLEKQFEC TAFVPVGRES DRKKVFRNIL  240
IALDKHKYMG FDTTALSDCQ LINELREHLD KRRYLIVIDD VWETSTWKLI KCALVDSSCG  300
SRVITTTRIS QVAHEVGDVY VMETLSDDDS KKLFYTRILD PVSQGDECKG QTNNQLDEAT  360
KRILRKCGGV PLSIITIASL LVDKPVEDWS NVYDSIGFGP KDQNGTVQNT RNILSLSYYD  420
LPSYLKTCLL YLSIFPEDHW IEKNSLIWMW VAEGFLNEEQ GKGSFEDGER CFTELINKSM  480
IQPTKSDEDA AVDGCHVHDM VLDLIRSLAT EENFIKILDR EHQDCSSPWS RSVRRLALHE  540
GSNQDKNDNL ADGMTKLRSF NAIKCPISML LQLVSFQTLR VLVLEGCEIM EGYHLKHLGK  600
LRQLRYLGLK DTRVAKLPRE IGDLVHLLVL DVRDTGLEEL PETVRELSKL MSLRVNDSMS  660
YLWLLWVGKL TSLQELVLGN VVMSPWLIAE LGKLTELRIL EISFLESGEH MESLLEALRG  720
LCRIRILTLR FCPDEVLVSS WEGWEPPRQL CQFVMEGVCL ARLPGWVNST CVPHLSYLRL  780
KLLVMEAQDW EVLARMPELH SLCIYSTLRL SSAGSVESPI YDGYNWRMYG QKEIPGPKHP  840
RVYYLCMHHQ SQRCTATKQV QCRDEDSTLF DVIYHGMHTC VQRTSAEMPA RQNYVATEVR  900
VGAVSGEGPV DDGYSWRKYA QKEVLGANYP RAYYRCTHRH SQGCAATKQV QRCNEDPMVF  960
EVTYRGIHTC IQSAVAMQPP LEQNPSASGG SIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C2e-5567904784Disease resistance RPP13-like protein 4
6j5t_F2e-5567904784Disease resistance RPP13-like protein 4
6j5t_G2e-5567904784Disease resistance RPP13-like protein 4
6j5t_L2e-5567904784Disease resistance RPP13-like protein 4
6j5t_O2e-5567904784Disease resistance RPP13-like protein 4
6j5u_A2e-5567904784Disease resistance RPP13-like protein 4
6j5v_A2e-5567904784Disease resistance RPP13-like protein 4
6j5w_A2e-5567904784Disease resistance RPP13-like protein 4
6j6i_C2e-5567904784Disease resistance RPP13-like protein 4
6j6i_F2e-5567904784Disease resistance RPP13-like protein 4
6j6i_G2e-5567904784Disease resistance RPP13-like protein 4
6j6i_L2e-5567904784Disease resistance RPP13-like protein 4
6j6i_O2e-5567904784Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G178800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617960.10.0disease resistance protein RGA5-like isoform X1
RefseqXP_015617961.10.0disease resistance protein RGA5-like isoform X1
TrEMBLK3ZN480.0K3ZN48_SETIT; Uncharacterized protein
STRINGSi028023m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-29WRKY family protein