PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G178800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 994aa MW: 113055 Da PI: 6.5675 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 65.1 | 1.2e-20 | 821 | 880 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 DgynWr YGqKe+ g ++pr YY C ++ +C+++k+v++ +ed ++++++Y+g H++ Sevir.8G178800.1.p 821 YDGYNWRMYGQKEIPGPKHPRVYYLCMHHqsqRCTATKQVQCRDEDSTLFDVIYHGMHTC 880 5**************************988889*************************98 PP | |||||||
2 | WRKY | 82 | 5.9e-26 | 910 | 970 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 +dDgy+WrKY qKev g+++pr+YYrCt++ gC ++k+v+r++edp v+e+tY+g H++ Sevir.8G178800.1.p 910 VDDGYSWRKYAQKEVLGANYPRAYYRCTHRhsqGCAATKQVQRCNEDPMVFEVTYRGIHTC 970 59***************************98999*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd14798 | 1.42E-26 | 4 | 134 | No hit | No description |
SuperFamily | SSF52540 | 1.33E-54 | 153 | 432 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 2.9E-20 | 174 | 341 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 1.6E-55 | 184 | 460 | IPR002182 | NB-ARC |
PRINTS | PR00364 | 1.6E-15 | 192 | 207 | No hit | No description |
PRINTS | PR00364 | 1.6E-15 | 268 | 282 | No hit | No description |
PRINTS | PR00364 | 1.6E-15 | 367 | 381 | No hit | No description |
Gene3D | G3DSA:3.80.10.10 | 9.4E-19 | 525 | 805 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52047 | 2.04E-28 | 549 | 813 | No hit | No description |
PRINTS | PR00364 | 1.6E-15 | 574 | 590 | No hit | No description |
PROSITE profile | PS50811 | 17.568 | 815 | 878 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.9E-21 | 816 | 881 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-19 | 819 | 880 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.0E-25 | 820 | 882 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.6E-20 | 822 | 880 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.1E-27 | 899 | 971 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.171 | 905 | 968 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.15E-23 | 907 | 970 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-37 | 910 | 972 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-24 | 911 | 970 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 994 aa Download sequence Send to blast |
MEFATGAIGT LLPKLGMLLK EEYDLQKSVK EGIRFLMAEL ECMQVGLKKV SNMPLDQLDE 60 LVKIWARDVR ELSYDMEDIV DTFMLRVDGL EPNKKHDIKG LVQRCCNSLS KVKICHSIGN 120 KIKYIKSQVE EVKKRHDRYR IDDVIAQHPT VDPRIFTLFE EVTNLVGIGK TSNDLIKRLF 180 GGDDSTNKKL KIVSIVGFGG LGKTTLAKAV FDMLEKQFEC TAFVPVGRES DRKKVFRNIL 240 IALDKHKYMG FDTTALSDCQ LINELREHLD KRRYLIVIDD VWETSTWKLI KCALVDSSCG 300 SRVITTTRIS QVAHEVGDVY VMETLSDDDS KKLFYTRILD PVSQGDECKG QTNNQLDEAT 360 KRILRKCGGV PLSIITIASL LVDKPVEDWS NVYDSIGFGP KDQNGTVQNT RNILSLSYYD 420 LPSYLKTCLL YLSIFPEDHW IEKNSLIWMW VAEGFLNEEQ GKGSFEDGER CFTELINKSM 480 IQPTKSDEDA AVDGCHVHDM VLDLIRSLAT EENFIKILDR EHQDCSSPWS RSVRRLALHE 540 GSNQDKNDNL ADGMTKLRSF NAIKCPISML LQLVSFQTLR VLVLEGCEIM EGYHLKHLGK 600 LRQLRYLGLK DTRVAKLPRE IGDLVHLLVL DVRDTGLEEL PETVRELSKL MSLRVNDSMS 660 YLWLLWVGKL TSLQELVLGN VVMSPWLIAE LGKLTELRIL EISFLESGEH MESLLEALRG 720 LCRIRILTLR FCPDEVLVSS WEGWEPPRQL CQFVMEGVCL ARLPGWVNST CVPHLSYLRL 780 KLLVMEAQDW EVLARMPELH SLCIYSTLRL SSAGSVESPI YDGYNWRMYG QKEIPGPKHP 840 RVYYLCMHHQ SQRCTATKQV QCRDEDSTLF DVIYHGMHTC VQRTSAEMPA RQNYVATEVR 900 VGAVSGEGPV DDGYSWRKYA QKEVLGANYP RAYYRCTHRH SQGCAATKQV QRCNEDPMVF 960 EVTYRGIHTC IQSAVAMQPP LEQNPSASGG SIQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j5t_C | 2e-55 | 6 | 790 | 4 | 784 | Disease resistance RPP13-like protein 4 |
6j5t_F | 2e-55 | 6 | 790 | 4 | 784 | Disease resistance RPP13-like protein 4 |
6j5t_G | 2e-55 | 6 | 790 | 4 | 784 | Disease resistance RPP13-like protein 4 |
6j5t_L | 2e-55 | 6 | 790 | 4 | 784 | Disease resistance RPP13-like protein 4 |
6j5t_O | 2e-55 | 6 | 790 | 4 | 784 | Disease resistance RPP13-like protein 4 |
6j5u_A | 2e-55 | 6 | 790 | 4 | 784 | Disease resistance RPP13-like protein 4 |
6j5v_A | 2e-55 | 6 | 790 | 4 | 784 | Disease resistance RPP13-like protein 4 |
6j5w_A | 2e-55 | 6 | 790 | 4 | 784 | Disease resistance RPP13-like protein 4 |
6j6i_C | 2e-55 | 6 | 790 | 4 | 784 | Disease resistance RPP13-like protein 4 |
6j6i_F | 2e-55 | 6 | 790 | 4 | 784 | Disease resistance RPP13-like protein 4 |
6j6i_G | 2e-55 | 6 | 790 | 4 | 784 | Disease resistance RPP13-like protein 4 |
6j6i_L | 2e-55 | 6 | 790 | 4 | 784 | Disease resistance RPP13-like protein 4 |
6j6i_O | 2e-55 | 6 | 790 | 4 | 784 | Disease resistance RPP13-like protein 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G178800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617960.1 | 0.0 | disease resistance protein RGA5-like isoform X1 | ||||
Refseq | XP_015617961.1 | 0.0 | disease resistance protein RGA5-like isoform X1 | ||||
TrEMBL | K3ZN48 | 0.0 | K3ZN48_SETIT; Uncharacterized protein | ||||
STRING | Si028023m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 2e-29 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G178800.1.p |