PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GRF

Protein Properties

Length: 363aa MW: 39118.8 Da PI: 8.3837

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.8G160800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	70.4	2.2e-22	127	171	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 daepgrCrRtDGKkWRCsr++++++k+CErH++r+++rsrk++e+ Sevir.8G160800.1.p 127 DAEPGRCRRTDGKKWRCSRDAVGDQKYCERHIKRNCHRSRKHVES 171 79****************************************996 PP
2	QLQ	57.2	5.1e-20	67	103	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++a n+PvP+ Ll++i++ Sevir.8G160800.1.p 67 GPFTPTQWMELEHQALIYKHFAVNAPVPSSLLLPIRR 103 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	6.4E-12	67	103	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	9.0E-14	68	102	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.464	68	103	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.468	127	171	IPR014977	WRC domain
Pfam	PF08879	2.1E-17	128	170	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MEAGRDGFLG AAGRASPPPP SCSFLGSATT TASSGAQMLS FSSSGAAGLG LSSGASKMQG 60 VLSRVRGPFT PTQWMELEHQ ALIYKHFAVN APVPSSLLLP IRRSINPWSG LGSSSLGWTP 120 FRPGPGDAEP GRCRRTDGKK WRCSRDAVGD QKYCERHIKR NCHRSRKHVE SRKATPTIAE 180 PSMAVSGGPS LHSYAVPWQQ QVKSSAATMT DSFSRESNRK LLEKQNVHNQ LSVSAPMDSF 240 DFASSGSSQN RDIVPLSPVE LQHDHDQAYI VHGVGSSAEN GNELQESLLL VSRETLDDGP 300 LGEVFKSKIC QSAYADILTD QWTVTRDLQL SNSNTMPVEN HISSNGYLMA TMVNSQTVPT 360 FL*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MEAGRDGFLG AAGRASPPPP SCSFLGSATT TASSGAQMLS FSSSGAAGLG LSSGASKMQG  60
VLSRVRGPFT PTQWMELEHQ ALIYKHFAVN APVPSSLLLP IRRSINPWSG LGSSSLGWTP  120
FRPGPGDAEP GRCRRTDGKK WRCSRDAVGD QKYCERHIKR NCHRSRKHVE SRKATPTIAE  180
PSMAVSGGPS LHSYAVPWQQ QVKSSAATMT DSFSRESNRK LLEKQNVHNQ LSVSAPMDSF  240
DFASSGSSQN RDIVPLSPVE LQHDHDQAYI VHGVGSSAEN GNELQESLLL VSRETLDDGP  300
LGEVFKSKIC QSAYADILTD QWTVTRDLQL SNSNTMPVEN HISSNGYLMA TMVNSQTVPT  360
FL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.8G160800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004979454.1	0.0	growth-regulating factor 8
Swissprot	Q6AWY1	1e-143	GRF8_ORYSJ; Growth-regulating factor 8
TrEMBL	A0A368S9K5	0.0	A0A368S9K5_SETIT; Uncharacterized protein
STRING	Si026680m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12960	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	2e-41	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Sevir.8G160800.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]