PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G118900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 443aa    MW: 45822.5 Da    PI: 8.163
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G118900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09266313455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Sevir.8G118900.1.p 266 SHSLAERVRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 313
                         8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.22E-15260329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-11260317No hitNo description
Gene3DG3DSA:4.10.280.104.1E-15262317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.809262312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6266313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-11268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MAHDGFLGRF HDLAWPVAHH AAVANAGGGG APFVALQVHV QHELMGAGAG ARSGWEHDAA  60
MGSLVPSRSP SPSSLAAAAS GAAAVDTALM EQLASRLGVS VPSSSRYASC YSSPVGSPSK  120
PAPAPFGAPL LGADAARLSC FAASGGKLSR VASSQLLLGE PVTAPAPGTA QQHASDGSSS  180
DSPSRKRKAP GGKSKAKEAA TTATPKSREP ETRAKKCKLS ADTADEERKP AAGEAGSGNG  240
KGKEVAAEPP KDYIHVRARR GQATDSHSLA ERVRREKISE RMKLLQDLVP GCSKVTGKAV  300
MLDEIINYVQ SLQRQVEIPL LLQQFLSMKL STVNPRLEID VDSFIPKDAN QPCAPAASSL  360
PPPPVYSLED SSPALCYASS QGTAAPSAVT SAKSFATPST FVNHGIPDHS LEGFHNANSQ  420
MGSLWEEDDL QSLVLMGFRG NT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G118900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9745739e-75EU974573.1 Zea mays clone 453265 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703449.10.0transcription factor bHLH62
TrEMBLK3ZII50.0K3ZII5_SETIT; Uncharacterized protein
STRINGSi026387m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-51bHLH family protein