PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

AP2

Protein Properties

Length: 553aa MW: 58932.2 Da PI: 6.7235

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.8G110200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.8	1.5e-14	141	200	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+ ++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Sevir.8G110200.1.p 141 SIYRGVTKHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 200 57*****************666664478446***********************98 PP
2	AP2	47.1	5.9e-15	243	294	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Sevir.8G110200.1.p 243 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 294 57**************988532...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.57E-20	141	210	No hit	No description
Pfam	PF00847	3.0E-11	141	200	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.24E-16	141	210	IPR016177	DNA-binding domain
SMART	SM00380	9.8E-29	142	214	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.9E-14	142	209	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.571	142	208	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-6	143	154	IPR001471	AP2/ERF domain
Pfam	PF00847	7.3E-10	243	294	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-18	243	304	IPR016177	DNA-binding domain
CDD	cd00018	3.97E-23	243	304	No hit	No description
SMART	SM00380	1.5E-33	244	308	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.7E-18	244	303	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.045	244	302	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-6	284	304	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence Send to blast
MGSTNNWLGF ASFSGAADDA AILPPLPPSP RGDGAGAEPK LEDFLGLQEP AATVAAGRPF 60 VGTGGASSIG LSMIKNWLRS QPAPEPAVAA DSMALAAVAV VSPEGSGKVT DDGAESGGGA 120 VVVAAQQRKA AAVDTFGQRT SIYRGVTKHR WTGRYEAHLW DNSCRREGQT RKGRQVYLGG 180 YDKEEKAARA YDLAALKYWG TTTTTNFQIS NYEKELEEMK HMSRQEYVAS LRRKSSGFSR 240 GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN 300 FDMSRYDVKS IIESSSLPVG GTTKRLKDVP DQSDMGRNGH SADSVGHMTA TNLLTDGIGS 360 YGPENYGYSG WSPAAMTSIP LQFSNGHDQS RLWCKPEQDS AVVAAAHNLH HLQHFPAPGG 420 THNFFQPSPI QDMTGVADDS SPSVDSNSFS YNGSVGYHGA MGGGYAMPVT TLVEGNPAAS 480 GYGVEEGTTD VYDCRNIYYL SQGSPGANTG KPEAYDQQGA GYESWVPAVP VISQKAANVT 540 VCHGTPLYSV WK*

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence Send to blast

MGSTNNWLGF ASFSGAADDA AILPPLPPSP RGDGAGAEPK LEDFLGLQEP AATVAAGRPF  60
VGTGGASSIG LSMIKNWLRS QPAPEPAVAA DSMALAAVAV VSPEGSGKVT DDGAESGGGA  120
VVVAAQQRKA AAVDTFGQRT SIYRGVTKHR WTGRYEAHLW DNSCRREGQT RKGRQVYLGG  180
YDKEEKAARA YDLAALKYWG TTTTTNFQIS NYEKELEEMK HMSRQEYVAS LRRKSSGFSR  240
GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN  300
FDMSRYDVKS IIESSSLPVG GTTKRLKDVP DQSDMGRNGH SADSVGHMTA TNLLTDGIGS  360
YGPENYGYSG WSPAAMTSIP LQFSNGHDQS RLWCKPEQDS AVVAAAHNLH HLQHFPAPGG  420
THNFFQPSPI QDMTGVADDS SPSVDSNSFS YNGSVGYHGA MGGGYAMPVT TLVEGNPAAS  480
GYGVEEGTTD VYDCRNIYYL SQGSPGANTG KPEAYDQQGA GYESWVPAVP VISQKAANVT  540
VCHGTPLYSV WK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269\|PubMed:12172019}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00610	ChIP-seq	Transfer from AT5G17430	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.8G110200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ317444	0.0	HQ317444.1 Cenchrus ciliaris clone C164L13 AP2 domain-containing protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004979180.1	0.0	AP2-like ethylene-responsive transcription factor BBM1
Swissprot	Q6PQQ4	1e-131	BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBL	A0A368S6J6	0.0	A0A368S6J6_SETIT; Uncharacterized protein
STRING	Si028170m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1569	37	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17430.1	1e-122	AP2 family protein

Link Out ? help Back to Top
Phytozome	Sevir.8G110200.1.p

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Horstman A,Willemsen V,Boutilier K,Heidstra R AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks. Trends Plant Sci., 2014. 19(3): p. 146-57 [PMID:24280109] Horstman A, et al. AIL and HDG proteins act antagonistically to control cell proliferation. Development, 2015. 142(3): p. 454-64 [PMID:25564655] Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor. BMC Plant Biol., 2015. 15: p. 121 [PMID:25976599] Lutz KA,Martin C,Khairzada S,Maliga P Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture. Plant Cell Rep., 2015. 34(10): p. 1849-56 [PMID:26156330] Horstman A, et al. The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis. Plant Physiol., 2017. 175(2): p. 848-857 [PMID:28830937] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398] Horstman A,Bemer M,Boutilier K A transcriptional view on somatic embryogenesis. Regeneration (Oxf), 2017. 4(4): p. 201-216 [PMID:29299323]