PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G101200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 304aa    MW: 33974.5 Da    PI: 6.7258
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G101200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY53.26e-17122183259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE.-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkver.saedpkvveitYegeHnhe 59 
                          Dg  WrKYG K+++g++f r+Y+rC+++   g +++k++++ s++d  ++++tY++eH+++
  Sevir.8G101200.1.p 122 TDGSVWRKYGEKKINGTHFKRHYFRCSYKydrGXQATKQIQQqSSNDLPMFQVTYNSEHTCN 183
                         6999************************998899******86267899************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-19111183IPR003657WRKY domain
PROSITE profilePS5081114.125116185IPR003657WRKY domain
SuperFamilySSF1182901.29E-16116184IPR003657WRKY domain
SMARTSM007742.9E-21121184IPR003657WRKY domain
PfamPF031063.9E-19123182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MACVPDRYSA KREVAQAYEL IKSHQPRLQF DDVLQLSATT NLAQSLLNDA MRALHLALCV  60
MNPQISAHCG AESSSRSNRP HLFSPSAEAG DVGRITSQQK KGKRRRANEE TSRVILTEAP  120
HTDGSVWRKY GEKKINGTHF KRHYFRCSYK YDRGXQATKQ IQQQSSNDLP MFQVTYNSEH  180
TCNCTTAANK YIKSDLPQRS XCDNNGTISQ MGDAMIRQEQ GLLPPRAEGS TVFMDTMSWE  240
EPFVLSNLYS LSPNHAGYHM TSTDDGASDF HCGSSDGTYL VLPPEPIFED NPCIDAELDL  300
LYI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G101200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980386.10.0probable WRKY transcription factor 54
TrEMBLK3ZMX40.0K3ZMX4_SETIT; Uncharacterized protein
STRINGSi027946m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.17e-15WRKY DNA-binding protein 54