PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G100700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 27092.3 Da PI: 6.1254 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.5 | 1e-15 | 88 | 137 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr ++ +g+++AeIrd + k +r+++g+f+++e Aa a+++a+ + +g Sevir.8G100700.1.p 88 FIGVRKRP-WGKFAAEIRDsT--R-KGARVWIGTFDSPEAAALAYDQAAFAARG 137 57******.**********32..2.24**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.167 | 87 | 145 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-30 | 87 | 151 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-26 | 88 | 145 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-20 | 88 | 147 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.19E-16 | 88 | 146 | No hit | No description |
PRINTS | PR00367 | 3.0E-10 | 88 | 99 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.9E-12 | 88 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 127 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGPSTIRDHQ HWSPGTVDTV DMPLDIDAFL IGSNADAAAA EECSDWLSPS SSTSSEVANV 60 SPSTPDVHQR PDAGTAPAAS PGDKRQAFIG VRKRPWGKFA AEIRDSTRKG ARVWIGTFDS 120 PEAAALAYDQ AAFAARGTTA VLNFPVECVR ESLGPLALAG GAGCGSPVLA LKRRHSKRTR 180 RRKVSPTGFS NSKSTLQDLQ PPAGQCSVVS GTAVDMPQQQ ATVSISQCPS GIVELDDLGD 240 AYLEKLLRVV SSELGEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-23 | 88 | 148 | 15 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G100700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022685223.1 | 0.0 | ethylene-responsive transcription factor ERF094-like | ||||
Swissprot | Q8VYM0 | 1e-40 | ERF93_ARATH; Ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A368S669 | 0.0 | A0A368S669_SETIT; Uncharacterized protein | ||||
STRING | Si028088m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP27648 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 2e-25 | ethylene-responsive element binding factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G100700.1.p |
Publications ? help Back to Top | |||
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