PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G090500.9.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | CAMTA | ||||||||
Protein Properties | Length: 308aa MW: 36160.9 Da PI: 9.2758 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 162 | 1.1e-50 | 10 | 122 | 5 | 117 |
CG-1 5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 k+rwlk++e+++iL n+e + ++++l+++p+sgs++L+nr+++ryfr+DG++w+kk +gk+v+E+he+LKv+++e+l+cyYa++++nptfq Sevir.8G090500.9.p 10 KTRWLKPQEVLQILRNHELFMISHKLPQKPPSGSWFLINRRVLRYFRNDGFEWQKKENGKSVNETHERLKVDNMEALNCYYARGDKNPTFQ 100 79***************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylev 117 rr+yw+L+ ++e+ivl hy++v Sevir.8G090500.9.p 101 RRIYWMLDPAYEHIVLLHYRDV 122 ********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 65.761 | 2 | 128 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.1E-57 | 9 | 123 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.3E-46 | 10 | 122 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF52540 | 1.51E-5 | 260 | 306 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 3.7 | 260 | 282 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.17 | 262 | 281 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 1.9 | 283 | 305 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.498 | 284 | 307 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0055 | 285 | 304 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MHKLQQVVMK TRWLKPQEVL QILRNHELFM ISHKLPQKPP SGSWFLINRR VLRYFRNDGF 60 EWQKKENGKS VNETHERLKV DNMEALNCYY ARGDKNPTFQ RRIYWMLDPA YEHIVLLHYR 120 DVPEGSSFSE TARNDSFTLN QNSSTPTRAE LCSSSGWTSE TPLPFPRSAY EVSPRTANIN 180 NERKSTSGSH LIQHKKIFEK QLSLEDQEDS DVTDKEVENL PDDIFNELEF SRDHTKETGT 240 QPCHNSCLSI HEAFAVSHGV LEKSALSIQK NFRCWKRQKE FLKLRKYAIK IQAQVRANQE 300 RKKYMEL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G090500.9.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816190.1 | 1e-111 | calmodulin-binding transcription activator 4-like isoform X1 | ||||
Refseq | XP_025816192.1 | 1e-111 | calmodulin-binding transcription activator 4-like isoform X2 | ||||
TrEMBL | A0A3L6SKI1 | 1e-111 | A0A3L6SKI1_PANMI; Calmodulin-binding transcription activator 4-like | ||||
STRING | Pavir.Ea03904.1.p | 1e-109 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 2e-51 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G090500.9.p |