PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G090500.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | CAMTA | ||||||||
Protein Properties | Length: 226aa MW: 26140.2 Da PI: 7.2192 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 50 | 5.9e-16 | 2 | 40 | 79 | 117 |
CG-1 79 evlycyYahseenptfqrrcywlLeeelekivlvhylev 117 e+l+cyYa++++nptfqrr+yw+L+ ++e+ivl hy++v Sevir.8G090500.7.p 2 EALNCYYARGDKNPTFQRRIYWMLDPAYEHIVLLHYRDV 40 89***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 30.804 | 1 | 46 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.2E-12 | 2 | 40 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM00015 | 3.7 | 178 | 200 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 8.76E-6 | 178 | 224 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00612 | 0.11 | 180 | 199 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 1.9 | 201 | 223 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.498 | 202 | 225 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0036 | 203 | 222 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEALNCYYAR GDKNPTFQRR IYWMLDPAYE HIVLLHYRDV PEGSSFSETA RNDSFTLNQN 60 SSTPTRAELC SSSGWTSETP LPFPRSAYEV SPRTANINNE RKSTSGSHLI QHKKIFEKQL 120 SLEDQEDSDV TDKEVENLPD DIFNELEFSR DHTKETGTQP CHNSCLSIHE AFAVSHGVLE 180 KSALSIQKNF RCWKRQKEFL KLRKYAIKIQ AQVRANQERK KYMEL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G090500.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816190.1 | 5e-55 | calmodulin-binding transcription activator 4-like isoform X1 | ||||
Refseq | XP_025816192.1 | 4e-55 | calmodulin-binding transcription activator 4-like isoform X2 | ||||
TrEMBL | A0A3L6SKI1 | 7e-55 | A0A3L6SKI1_PANMI; Calmodulin-binding transcription activator 4-like | ||||
STRING | Pavir.Ea03904.1.p | 3e-55 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 1e-21 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G090500.7.p |