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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G090500.11.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | CAMTA | ||||||||
Protein Properties | Length: 312aa MW: 36577.4 Da PI: 9.0919 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 162 | 1.1e-50 | 14 | 126 | 5 | 117 |
CG-1 5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 k+rwlk++e+++iL n+e + ++++l+++p+sgs++L+nr+++ryfr+DG++w+kk +gk+v+E+he+LKv+++e+l+cyYa++++nptf Sevir.8G090500.11.p 14 KTRWLKPQEVLQILRNHELFMISHKLPQKPPSGSWFLINRRVLRYFRNDGFEWQKKENGKSVNETHERLKVDNMEALNCYYARGDKNPTF 103 79**************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylev 117 qrr+yw+L+ ++e+ivl hy++v Sevir.8G090500.11.p 104 QRRIYWMLDPAYEHIVLLHYRDV 126 *********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 65.761 | 6 | 132 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.1E-57 | 13 | 127 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.4E-46 | 14 | 126 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF52540 | 1.51E-5 | 264 | 310 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 3.7 | 264 | 286 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.17 | 266 | 285 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 1.9 | 287 | 309 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.498 | 288 | 311 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0056 | 289 | 308 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MGLDMHKLQQ VVMKTRWLKP QEVLQILRNH ELFMISHKLP QKPPSGSWFL INRRVLRYFR 60 NDGFEWQKKE NGKSVNETHE RLKVDNMEAL NCYYARGDKN PTFQRRIYWM LDPAYEHIVL 120 LHYRDVPEGS SFSETARNDS FTLNQNSSTP TRAELCSSSG WTSETPLPFP RSAYEVSPRT 180 ANINNERKST SGSHLIQHKK IFEKQLSLED QEDSDVTDKE VENLPDDIFN ELEFSRDHTK 240 ETGTQPCHNS CLSIHEAFAV SHGVLEKSAL SIQKNFRCWK RQKEFLKLRK YAIKIQAQVR 300 ANQERKKYME L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G090500.11.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816190.1 | 1e-113 | calmodulin-binding transcription activator 4-like isoform X1 | ||||
Refseq | XP_025816192.1 | 1e-114 | calmodulin-binding transcription activator 4-like isoform X2 | ||||
TrEMBL | A0A3L6SKI1 | 1e-113 | A0A3L6SKI1_PANMI; Calmodulin-binding transcription activator 4-like | ||||
STRING | Pavir.Ea03904.1.p | 1e-111 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9407 | 34 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 2e-51 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G090500.11.p |