PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G081800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ZF-HD | ||||||||
Protein Properties | Length: 378aa MW: 39055 Da PI: 8.1418 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.9 | 1.1e-32 | 85 | 140 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+ev++ Sevir.8G081800.2.p 85 VVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKEVDD 140 689*************************9.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.4E-29 | 86 | 138 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-24 | 87 | 138 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.0E-30 | 87 | 138 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.735 | 88 | 137 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.11E-20 | 233 | 302 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-31 | 233 | 304 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.6E-26 | 244 | 300 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MDLSGTQGEL AIPMHANVVS PYGGGSAGGH VLQLHHVEQH GNNNNGQSPA LPPSPPAAAA 60 AEEMEGSAKK RGAGGGAGIG GGATVVKYRE CLKNHAAAIG GNATDGCGEF MPSGEEGSLE 120 ALKCSACGCH RNFHRKEVDD DDDDAMYAAA GHGHRAARRL LAPAMPHHHN KGGGGGLLVS 180 AADPYGAYAA ARALPPPPGH GHPHHHQYVM PLTMMHNSES DDMDISGGSG AARGGGSGGS 240 SSSRKRFRTK FTPEQKARML EFAERVGWRL QKLDDAMVQA FCQDIGVKRR VLKVWMHNNK 300 HNLATKRLEA ASPPQEQQAM AAAAAALPSP PPSAPLMPLQ MMPPGIMPPP PPPAQAAGPS 360 CHRGGPGSPP SPPLKLE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 5e-24 | 244 | 302 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G081800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135460 | 1e-168 | AC135460.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0091I11, complete sequence. | |||
GenBank | AK287714 | 1e-168 | AK287714.1 Oryza sativa Japonica Group cDNA, clone: J065133O18, full insert sequence. | |||
GenBank | AP014967 | 1e-168 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661088.1 | 0.0 | zinc-finger homeodomain protein 4-like isoform X1 | ||||
Swissprot | Q53N87 | 3e-97 | ZHD4_ORYSJ; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A368S5E6 | 0.0 | A0A368S5E6_SETIT; Uncharacterized protein | ||||
STRING | GRMZM2G068330_P02 | 1e-144 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 1e-28 | homeobox protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G081800.2.p |