PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G068300.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 476aa MW: 52918.1 Da PI: 10.2228 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.3 | 2.9e-18 | 107 | 195 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffk++ ++ rl +p f ++ ++++++ ++l+ +sg++W+ l + s++ ++++GWkeFv ++ +k+g f+vF++dg s+f Sevir.8G068300.4.p 107 FFKIFF--PDQSRERLKIPTAFHQHLKEQPTG--LVSLKGPSGNTWQAVL--TSDSEGLFFEQGWKEFVTDHSVKQGHFLVFTYDGLSRF- 190 677773..3456678*******9666777766..7***************..********************************998888. PP .EEEEE CS B3 92 lvvkvf 97 v+vf Sevir.8G068300.4.p 191 -SVTVF 195 .66666 PP | |||||||
2 | B3 | 44.1 | 3.8e-14 | 369 | 460 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ++++ s+v + + +f++e ++ sk++tl d+ g+ W+v++ y ++ +++GW +F+ n+L+ D++vF+l ++ + + Sevir.8G068300.4.p 369 QTMMESYVYVGFFMNITCEFVRESL--PRISKKMTLWDPLGKPWQVNYVYYSDRSVASFSGGWGKFALGNNLEKFDVCVFELFKE--DNIK 455 6789999999999999999*98884..56899****************9988888899***********************8764..4457 PP EEEE- CS B3 94 vkvfr 98 v+++r Sevir.8G068300.4.p 456 VHIYR 460 88776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-22 | 100 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.71E-19 | 105 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.126 | 105 | 198 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-16 | 107 | 194 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-13 | 107 | 198 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.48E-17 | 107 | 195 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-23 | 358 | 460 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-23 | 360 | 460 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.92E-22 | 365 | 460 | No hit | No description |
PROSITE profile | PS50863 | 12.167 | 367 | 462 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.7E-10 | 367 | 462 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-12 | 369 | 460 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MAAGRKKHQG SSGAAAAAAP EKESGKGKGK EKEVREAVGK EAAKEKQKQK GKEKEVREGG 60 KEKSAKEKQK QKGKQNEVRE DGKGKEKAAA KVKQEAAAAA KSAGQQFFKI FFPDQSRERL 120 KIPTAFHQHL KEQPTGLVSL KGPSGNTWQA VLTSDSEGLF FEQGWKEFVT DHSVKQGHFL 180 VFTYDGLSRF SVTVFGSFGV VDPPSLVAKR TNNVVIKIED DEEEVHVDMD AGGTSETSIL 240 PPEEGNGITG KRTREVNDIV ADGNASKRHS SVPKQAEKKS PEAIVRTSKD ASTIVNTEKD 300 TPFSILNEST AFNKTHVRDK NMPKLGKFIV RRARQPVVIS QRRPVTEEEK GLALRRAKEF 360 KSKNPFAVQT MMESYVYVGF FMNITCEFVR ESLPRISKKM TLWDPLGKPW QVNYVYYSDR 420 SVASFSGGWG KFALGNNLEK FDVCVFELFK EDNIKVHIYR VVPEITPLLR ASSRD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-12 | 340 | 461 | 22 | 142 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-12 | 340 | 461 | 22 | 142 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G068300.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978926.1 | 0.0 | B3 domain-containing protein Os11g0197600 | ||||
Swissprot | Q2R9D2 | 1e-131 | Y1176_ORYSJ; B3 domain-containing protein Os11g0197600 | ||||
TrEMBL | A0A368S4Y5 | 0.0 | A0A368S4Y5_SETIT; Uncharacterized protein | ||||
STRING | Si027380m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-14 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G068300.4.p |
Publications ? help Back to Top | |||
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