PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G036200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 266aa    MW: 30066.4 Da    PI: 7.3714
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G036200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.91.1e-2934133194
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k ltpsdv+k++rlv+pk++ae++    g + e++  l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ 
  Sevir.8G036200.1.p  34 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSGEKGLILSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGDIVHFERMRG 124
                         99***************************9666668889************************************************7754 PP

                         ..SEE..EE CS
                  B3  88 ..sefelvv 94 
                           ++ +l++
  Sevir.8G036200.1.p 125 fgMGDRLFI 133
                         345555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-4129144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.59E-2931139IPR015300DNA-binding pseudobarrel domain
CDDcd100177.44E-2832124No hitNo description
SMARTSM010191.5E-2134139IPR003340B3 DNA binding domain
PfamPF023623.4E-2734137IPR003340B3 DNA binding domain
PROSITE profilePS5086313.67634138IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MNHLSQEHPQ AWPWGMAMYT NLHYHHYYEK EHLFEKPLTP SDVGKLNRLV IPKQHAERYF  60
PLSGDSGEKG LILSFEDEAG KPWRFRYSYW TSSQSYVLTK GWSRYVKEKQ LDAGDIVHFE  120
RMRGFGMGDR LFICYRRRGE SATAAPAPPP AVRVAAPTQS AGGEQQPWSP MCYSTSGSYP  180
TSPANSHAYR CSVDHDPSNM QHAGESQWDR DNRSCSAASA PSRRLRLFGV NLDCGPGPEP  240
EPETPTTMYS YMHQSPYAPD NWGTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-52291383113B3 domain-containing transcription factor NGA1
5os9_B9e-52291383113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G036200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703854.10.0B3 domain-containing protein Os11g0156000
SwissprotQ53QI01e-122Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A368S5J50.0A0A368S5J5_SETIT; Uncharacterized protein
STRINGSi027632m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.24e-54B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]