PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G036200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 266aa MW: 30066.4 Da PI: 7.3714 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 93.9 | 1.1e-29 | 34 | 133 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k ltpsdv+k++rlv+pk++ae++ g + e++ l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ Sevir.8G036200.1.p 34 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSGEKGLILSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGDIVHFERMRG 124 99***************************9666668889************************************************7754 PP ..SEE..EE CS B3 88 ..sefelvv 94 ++ +l++ Sevir.8G036200.1.p 125 fgMGDRLFI 133 345555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.4E-41 | 29 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.59E-29 | 31 | 139 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.44E-28 | 32 | 124 | No hit | No description |
SMART | SM01019 | 1.5E-21 | 34 | 139 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-27 | 34 | 137 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.676 | 34 | 138 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MNHLSQEHPQ AWPWGMAMYT NLHYHHYYEK EHLFEKPLTP SDVGKLNRLV IPKQHAERYF 60 PLSGDSGEKG LILSFEDEAG KPWRFRYSYW TSSQSYVLTK GWSRYVKEKQ LDAGDIVHFE 120 RMRGFGMGDR LFICYRRRGE SATAAPAPPP AVRVAAPTQS AGGEQQPWSP MCYSTSGSYP 180 TSPANSHAYR CSVDHDPSNM QHAGESQWDR DNRSCSAASA PSRRLRLFGV NLDCGPGPEP 240 EPETPTTMYS YMHQSPYAPD NWGTP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 9e-52 | 29 | 138 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 9e-52 | 29 | 138 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G036200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012703854.1 | 0.0 | B3 domain-containing protein Os11g0156000 | ||||
Swissprot | Q53QI0 | 1e-122 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | A0A368S5J5 | 0.0 | A0A368S5J5_SETIT; Uncharacterized protein | ||||
STRING | Si027632m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.2 | 4e-54 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G036200.1.p |
Publications ? help Back to Top | |||
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