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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G021900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 22154.2 Da PI: 7.7214 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.1 | 8.7e-45 | 16 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +Ca+Ck+lrr+C+++Cv+apyfp e+p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++ql+ Sevir.8G021900.1.p 16 PCASCKLLRRRCTQECVFAPYFPPEDPHKFAIVHKVFGASNVSKMLQELPAQQRADAVSSLVYEANARMRDPVYGCVGAISYLQQQVSQLQ 106 7****************************************************************************************** PP DUF260 92 aelallkee 100 +lal+k+e Sevir.8G021900.1.p 107 MQLALAKAE 115 *****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1820 | 3.3E-4 | 5 | 144 | IPR029058 | Alpha/Beta hydrolase fold |
PROSITE profile | PS50891 | 26.851 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.0E-44 | 16 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MAGSGSSSGS GSSSSPCASC KLLRRRCTQE CVFAPYFPPE DPHKFAIVHK VFGASNVSKM 60 LQELPAQQRA DAVSSLVYEA NARMRDPVYG CVGAISYLQQ QVSQLQMQLA LAKAEILCVQ 120 MQHDGHATVS SPPSAASQQL ERKQQQLMDC EAYGSLLMQN GLMNTSFNST AAAHQQQQML 180 AGSLGSAGNT AMMLQEACLK KESLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-49 | 6 | 117 | 4 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-49 | 6 | 117 | 4 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G021900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661028.1 | 1e-130 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 1e-69 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | K3YBQ3 | 1e-133 | K3YBQ3_SETIT; Uncharacterized protein | ||||
STRING | Si011647m | 1e-134 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 4e-59 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G021900.1.p |
Publications ? help Back to Top | |||
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