PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G011300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 288aa MW: 32481.9 Da PI: 6.9125 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 61.6 | 1.4e-19 | 138 | 202 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.....STTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.....dpkvveitYegeHnhe 59 Dg +WrKYGqK+++++++prsYYrCt++ +C+++k v+++++ p + +++Y+g+H+++ Sevir.8G011300.1.p 138 DGRQWRKYGQKQINKAKHPRSYYRCTYRqeqDCKATKTVQQQDDsagtdHPVMYTVVYHGQHTCK 202 999************************98899********987422221467999********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.5E-21 | 129 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-20 | 131 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-28 | 136 | 203 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-23 | 138 | 202 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.229 | 138 | 178 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MKHHSSRYLP QSSPSDHPSF VSDHRSAMKE IARGQSLVTQ LRAIVLPALQ AGQRCELVAQ 60 MFQNILDCSS KAITKLQLHH QSDARADDAL EDDKKRVRRI SSDDCIKEEG ATAKPHHQHK 120 RRKSDDLVSL ETPVPHYDGR QWRKYGQKQI NKAKHPRSYY RCTYRQEQDC KATKTVQQQD 180 DSAGTDHPVM YTVVYHGQHT CKDNNGVESG TDDSETNTPS SSDSRSSIST TCTDAYEHQT 240 SLDDNKPLDK SSDLITKNCM YEPFDMAAFA PLDLDSWELD ALLRFGA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-15 | 138 | 202 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G011300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012703906.1 | 0.0 | probable WRKY transcription factor 70 | ||||
TrEMBL | A0A368S312 | 0.0 | A0A368S312_SETIT; Uncharacterized protein | ||||
STRING | Si010764m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3258 | 30 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 9e-22 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G011300.1.p |