PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.7G319000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 508aa MW: 56096 Da PI: 6.0709 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.3 | 2.9e-16 | 172 | 232 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse...ng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k ++++lg ++t+e Aa+a++ a++k++g Sevir.7G319000.1.p 172 SVYRGVTRHRWTGRFEAHLWDkHCLtsiQNkkKGRQVYLGAYDTEEAAARAYDLAALKYWG 232 78*******************9988888445455*************************98 PP | |||||||
2 | AP2 | 56.6 | 6.3e-18 | 275 | 327 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + g +k+ +lg+f+t eeAaka++ a+ +++g+ Sevir.7G319000.1.p 275 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 327 89****99**********99966...3.6*************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.77E-17 | 172 | 241 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.84E-12 | 172 | 241 | No hit | No description |
Pfam | PF00847 | 4.6E-14 | 172 | 232 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-17 | 173 | 241 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-28 | 173 | 246 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.89 | 173 | 240 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-6 | 174 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-18 | 275 | 336 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-13 | 275 | 326 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.99E-26 | 275 | 336 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.9E-19 | 276 | 334 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-26 | 276 | 340 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.032 | 276 | 334 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-6 | 316 | 336 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006110 | Biological Process | regulation of glycolytic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0019432 | Biological Process | triglyceride biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 508 aa Download sequence Send to blast |
MHCNAGLRGA GCHLDDKQTG CHVVLAATEI LTKTPPLPLV LYKNPCSVHL AGKSFTCTGN 60 ATTIILHQGA SDEGASRRTT RKRRRSEKRH THMERSPRPS PPPVSSPPSS SSSSSISTEE 120 IPIPPRKRRA RPTQAEGGAP DKSKRPRKEA VRHRHSKEDP NATAASAGKR SSVYRGVTRH 180 RWTGRFEAHL WDKHCLTSIQ NKKKGRQVYL GAYDTEEAAA RAYDLAALKY WGPETVLNFP 240 AEDYSNEMSE MEGVSREEYL ASLRRRSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK 300 YLYLGTFDTQ EEAAKAYDLA AIEYRGANAV TNFDISCYLD HPXLLAQLQQ DPQVVPALNQ 360 EPQPDQSETT VQESDSSEEK TPDNNAEPXD NAEPDANAEP XNNAEPLTVD DSIEESLWSP 420 CMDYELDTMS RSNFGSSINL NEWFTDADLD SNIGCLFDGC SXVDEGSKDG VGLADFSLFE 480 EGDGKLKDVI SDIEEGIHPP TMISVCN* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 80 | 84 | RKRRR |
2 | 80 | 85 | RKRRRS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.7G319000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT038184 | 0.0 | BT038184.1 Zea mays full-length cDNA clone ZM_BFb0216H15 mRNA, complete cds. | |||
GenBank | KJ726910 | 0.0 | KJ726910.1 Zea mays clone pUT3455 AP2-EREBP transcription factor (EREB85) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977441.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g79700 | ||||
TrEMBL | A0A368S1F6 | 0.0 | A0A368S1F6_SETIT; Uncharacterized protein | ||||
STRING | Si012026m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5526 | 35 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54320.3 | 1e-78 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.7G319000.1.p |