PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G319000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 508aa    MW: 56096 Da    PI: 6.0709
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G319000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.9e-16172232155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse...ng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +    ++  k ++++lg ++t+e Aa+a++ a++k++g
  Sevir.7G319000.1.p 172 SVYRGVTRHRWTGRFEAHLWDkHCLtsiQNkkKGRQVYLGAYDTEEAAARAYDLAALKYWG 232
                         78*******************9988888445455*************************98 PP
2AP256.66.3e-18275327156
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg+f+t eeAaka++ a+ +++g+
  Sevir.7G319000.1.p 275 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 327
                         89****99**********99966...3.6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-17172241IPR016177DNA-binding domain
CDDcd000183.84E-12172241No hitNo description
PfamPF008474.6E-14172232IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-17173241IPR001471AP2/ERF domain
SMARTSM003802.5E-28173246IPR001471AP2/ERF domain
PROSITE profilePS5103220.89173240IPR001471AP2/ERF domain
PRINTSPR003674.6E-6174185IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-18275336IPR016177DNA-binding domain
PfamPF008472.0E-13275326IPR001471AP2/ERF domain
CDDcd000182.99E-26275336No hitNo description
Gene3DG3DSA:3.30.730.109.9E-19276334IPR001471AP2/ERF domain
SMARTSM003803.2E-26276340IPR001471AP2/ERF domain
PROSITE profilePS5103219.032276334IPR001471AP2/ERF domain
PRINTSPR003674.6E-6316336IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MHCNAGLRGA GCHLDDKQTG CHVVLAATEI LTKTPPLPLV LYKNPCSVHL AGKSFTCTGN  60
ATTIILHQGA SDEGASRRTT RKRRRSEKRH THMERSPRPS PPPVSSPPSS SSSSSISTEE  120
IPIPPRKRRA RPTQAEGGAP DKSKRPRKEA VRHRHSKEDP NATAASAGKR SSVYRGVTRH  180
RWTGRFEAHL WDKHCLTSIQ NKKKGRQVYL GAYDTEEAAA RAYDLAALKY WGPETVLNFP  240
AEDYSNEMSE MEGVSREEYL ASLRRRSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK  300
YLYLGTFDTQ EEAAKAYDLA AIEYRGANAV TNFDISCYLD HPXLLAQLQQ DPQVVPALNQ  360
EPQPDQSETT VQESDSSEEK TPDNNAEPXD NAEPDANAEP XNNAEPLTVD DSIEESLWSP  420
CMDYELDTMS RSNFGSSINL NEWFTDADLD SNIGCLFDGC SXVDEGSKDG VGLADFSLFE  480
EGDGKLKDVI SDIEEGIHPP TMISVCN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18084RKRRR
28085RKRRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G319000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381840.0BT038184.1 Zea mays full-length cDNA clone ZM_BFb0216H15 mRNA, complete cds.
GenBankKJ7269100.0KJ726910.1 Zea mays clone pUT3455 AP2-EREBP transcription factor (EREB85) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977441.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A368S1F60.0A0A368S1F6_SETIT; Uncharacterized protein
STRINGSi012026m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-78AP2 family protein