PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G313400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 288aa MW: 32537.8 Da PI: 6.6073 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 60.4 | 3.3e-19 | 138 | 202 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.....STTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.....dpkvveitYegeHnhe 59 Dg +WrKYGqK+++++++prsYYrCt++ +C+++k v+++++ p + +++Y+g+H+++ Sevir.7G313400.1.p 138 DGRQWRKYGQKHINKAKHPRSYYRCTYRqeqDCKATKTVQQQDDsagtdHPVMYTVVYHGQHTCK 202 999************************98899********987422221467999********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.0E-21 | 129 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-20 | 131 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-28 | 136 | 203 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.0E-23 | 138 | 202 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.183 | 138 | 178 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MKHHNSRYLP QSSPSDHPSF VSDHRSAMKE IARGQSLVTQ LRAIVLPALQ ADQRCELVAQ 60 MFQNILDCSS KAITELQLHH QSDARADDAL VDDKKRVRRI SSDDCIKEEG ATANPHHQHK 120 RRKSDDLVSL ETPVPHYDGR QWRKYGQKHI NKAKHPRSYY RCTYRQEQDC KATKTVQQQD 180 DSAGTDHPVM YTVVYHGQHT CKDNNGVESG TDDSETNTQS SSDSRSSIST TCTDAYEHQT 240 SLDDNKPLDK SADLITKNCM YEPFDMSAFA PLDSDSWELD ALLRFGA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-14 | 138 | 202 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G313400.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977389.1 | 0.0 | probable WRKY transcription factor 63 | ||||
TrEMBL | K3Y972 | 0.0 | K3Y972_SETIT; Uncharacterized protein | ||||
STRING | Si010764m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3258 | 30 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 4e-21 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G313400.1.p |