PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G313000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 300aa MW: 32537.4 Da PI: 7.8294 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 67 | 2.9e-21 | 125 | 187 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-..SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers..aedpkvveitYegeHnhe 59 +Dgy WrKYG K+++g+ ++rsY+rCt++ gC ++k+v+++ ++dp ++++tY++ H+++ Sevir.7G313000.1.p 125 EDGYGWRKYGEKKINGTSYTRSYFRCTYKddtGCLATKHVQQKdcNSDPPMFQVTYNNGHTCK 187 7***************************99999*******98622689*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-22 | 118 | 188 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-20 | 118 | 187 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.9E-30 | 124 | 188 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-22 | 125 | 187 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.063 | 125 | 184 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MGEGAVREVA QVYERIKIQH PLLLHYSSSH HHQPTTQLAH NLLSDALRAL NLALSVMKQH 60 PAAAGSVTPR IVKAAEPQIS PPRPASADSQ AIVTSTARSG KRRRSSVMME GKKSSWVNFT 120 TVPYEDGYGW RKYGEKKING TSYTRSYFRC TYKDDTGCLA TKHVQQKDCN SDPPMFQVTY 180 NNGHTCKNFT TTTAANNSGS SNDLALIGCC NSSEGVTIIS SRNNGHAGAA MNNIKQEQPP 240 VLLPPPLEIS ALPFDASRSG ESWDQYSAGD VAQIEEASAG DGLLDDPELF VLCTSFKVY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-13 | 125 | 187 | 9 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G313000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978333.1 | 0.0 | probable WRKY transcription factor 54 | ||||
TrEMBL | K3Y914 | 0.0 | K3Y914_SETIT; Uncharacterized protein | ||||
STRING | Si010706m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5045 | 26 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 6e-18 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G313000.1.p |