PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G305500.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Trihelix | ||||||||
Protein Properties | Length: 447aa MW: 51033.6 Da PI: 6.6787 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 75.8 | 7.2e-24 | 118 | 212 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+++v++Li+a ++++e+ ++++ +kk++W+++sk+m +rg+ +sp+qC++k+++lnkryk++++ +++ t++ + + + Sevir.7G305500.3.p 118 KWTDSMVKLLITAASYTGEDPGADSggrrncammQKKGKWKAISKVMGQRGCLVSPQQCEDKFNDLNKRYKRLTDLLGRGtTCRIVANPEL 208 7*********************986677788999*********************************************967999988888 PP trihelix 82 fdql 85 +d++ Sevir.7G305500.3.p 209 LDSM 212 8888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.4E-18 | 116 | 239 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MEGNNLPSGS LMQGTNYGSL DLHHNHMQMH APNSGNQGFN HSQMPSNFPI HLNQVTDSDQ 60 LSEFQFGEHG KANHHHQHHN QQHTKNSMSD DEEHGVNEDA TDSQTGKGKK GSAWHRMKWT 120 DSMVKLLITA ASYTGEDPGA DSGGRRNCAM MQKKGKWKAI SKVMGQRGCL VSPQQCEDKF 180 NDLNKRYKRL TDLLGRGTTC RIVANPELLD SMANLSDKTK DDARKILSSK HLFYEEMCSY 240 HNNNRFSLPE DPALQRSLQL ALKCKDEHDT RRRASGDADE DDQSADTDYE EENDDEHPVV 300 HVNKGTLPVH KRMRYMADQE DVGFGNSSSS HDCSRRSDPL SITVDINKVF PDGTNLALVQ 360 KDLATQSAEI EKQRMEIEAE ALELAKQRHK WERFSKKKDR ELEKMRLENE QMKIENRRLE 420 LEVRHKELEL ELRLKGNRSQ AWHDNI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G305500.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU952198 | 0.0 | EU952198.1 Zea mays clone 1220044 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012703139.1 | 0.0 | uncharacterized protein LOC101777650 | ||||
Refseq | XP_012703140.1 | 0.0 | uncharacterized protein LOC101777650 | ||||
Refseq | XP_022684365.1 | 0.0 | uncharacterized protein LOC101777650 | ||||
TrEMBL | K3Y7B3 | 0.0 | K3Y7B3_SETIT; Uncharacterized protein | ||||
STRING | Si010104m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-106 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G305500.3.p |