 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.7G298200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
TCP |
| Protein Properties |
Length: 416aa MW: 42117 Da PI: 6.3596 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.7G298200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 129.9 | 2.6e-40 | 105 | 216 | 3 | 113 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88
++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+ + + s +s a++ +
Sevir.7G298200.1.p 105 VAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANYSsLNISIRSGAAAAA-Npsra 194
789*****************************************************************66632222222222222.12322 PP
TCP 89 ..........kaaksaakskksqksaasalnlake 113
+ +++aa ++++
Sevir.7G298200.1.p 195 spfpalalhpH-----------HHQAA--AAPHDM 216
33333322220...........22222..222222 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 416 aa
Download sequence Send
to blast |
MDHGGGGGGG GGGGGAPSSS NSGGATASAG CASGGRGGDH HPFYYTGPAA SNSGVPQPPP 60
QQQPSPFAGA LAITPVPEQA QPSSAAGADK KALVPVAAPA AGPVVAKRPS KDRHTKVDGR 120
GRRIRMPALC AARVFQLTRE LGHKSDGETI EWLLQQAEPA ILAATGTGTI PANYSSLNIS 180
IRSGAAAAAN PSRASPFPAL ALHPHHHQAA AAPHDMSAMM GYHHHLLPPQ QQDPSAGDAY 240
MRKRYREDLF KEDDDRQDPS APKAREQQAA ATPPPPSAAM WAVGPNAAAP SGGFWMLPVS 300
ASSAAAARPT EQPMWSFSGG GGGTGTVQAP LQFMSRASYP STAAAGGGGG GMADTNIGML 360
AALNAYNRGG SEEQQQHQQP EGEQQHGGDG GGNDEEDDDD SGEENHGNNS SHCWG*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
