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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sevir.7G286200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
NF-YC |
| Protein Properties |
Length: 431aa MW: 47316.4 Da PI: 5.5076 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.7G286200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 71.8 | 1.1e-22 | 23 | 123 | 2 | 99 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89
++ fw k+ ie +df +h++P+ r+kk++ a++ m+ ++P +l+k ce+f+ el++r+w+ a++++r + sdia+av++ + +
Sevir.7G286200.1.p 23 IREFWRKKqeeIEAIEDFSKHAIPMRRLKKVISANKGKIMMRFDTPSFLTKVCEIFVQELSFRAWMCAHSQDRGVILDSDIADAVASIEPY 113
689**9876779999**************************************************************************** PP
NF-YC 90 dflvdivprd 99
df+ ++ p+d
Sevir.7G286200.1.p 114 DFFNNVLPTD 123
****999987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 431 aa
Download sequence Send
to blast |
MDHAIDIHAS SKKPALESKQ QMIREFWRKK QEEIEAIEDF SKHAIPMRRL KKVISANKGK 60
IMMRFDTPSF LTKVCEIFVQ ELSFRAWMCA HSQDRGVILD SDIADAVASI EPYDFFNNVL 120
PTDLEEYNSS LRSKPIKKHH HLLIDKPSTP THLPSDQYQM PQFIPQSVGH STYVHISPPL 180
SPKTGCRVPL SLTCVPQEPY PLMPTTITPA PIVSGRMVFL RNNISNNVDI LGVTTPLPVP 240
PSAQPNIPNN RYISTIASTS SDCVGYANTS NVVTQDGGSS ALQCSSPSPI ANNSGPIATC 300
LNHMKPEVAQ IKNDIHAHGT DGIDPEATTG VNDGQNQHGS LDAEVSTIAN VSGYSSNINW 360
DEVDMADDSL LIEFWEDIFM NKDPAPSPTA TSTTDHVPFP CDMPKLEGFG HELYLLDDIV 420
SSASTSRRLS *
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 27 | 50 | RKKQEEIEAIEDFSKHAIPMRRLK |
